New model in OGS2.0 | DPOGS210998  |
---|---|
Genomic Position | scaffold307:+ 81117-82483 |
See gene structure | |
CDS Length | 1077 |
Paired RNAseq reads   | 114 |
Single RNAseq reads   | 293 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA006478 (6e-12) |
Best Drosophila hit   | even skipped (7e-12) |
Best Human hit | homeobox even-skipped homolog protein 1 (1e-11) |
Best NR hit (blastp)   | even-skipped homeobox 2a [Salmo salar] (9e-12) |
Best NR hit (blastx)   | even-skipped homeobox 2a [Salmo salar] (4e-12) |
GeneOntology terms    | GO:0030528 transcription regulator activity GO:0045449 regulation of transcription GO:0005634 nucleus GO:0043565 sequence-specific DNA binding GO:0003677 DNA binding GO:0006355 regulation of transcription, DNA-dependent GO:0003700 sequence-specific DNA binding transcription factor activity |
InterPro families    | IPR017970 Homeobox, conserved site IPR001356 Homeobox IPR012287 Homeodomain-related IPR009057 Homeodomain-like |
Orthology group | ND |
Nucleotide sequence:
ATGAAATATTCAGTTTTAAAGCAATTGGCTAATGAGAGGCAGTTGAAGACAAATGACAAA
CCAGCTACAGTTCCACGTGAGGATGTACAGGGTTTATCGACACGTTATCATGAGAAGAAA
ACTCGAAGATTTCGTAGTGCATTCACAACTGATCAAATTAAATATTTGGAAAAACAATTT
CAAAAATTTCCATATATCGAAAGTGGTAGTCGAAGGGCGATTGCTAGTGTATTAAACATA
CCTGAGAGGACTGTAAAGTTTTGGTTTCAAAATCGAAGAATGAAAGAGAAGAAGGAGTCT
CTTATTAAGGACCTAGTCGGTGAGGGACAAAGCAAAATTAATGGAAATCTTACTGATGAC
AAGATGGACGTCAAGACTTTTAATTACCAATCCCATTCTGGCCATTTGTCATATCAATTG
AAACCAATATTAGTATGTCCAGATAAAACGGATAGCAGTTCCAGCAATGTTATAAATTGT
TCTAAGGAATTTTCTAAATCAGTTCATGAAAAGCAGAGTATTGCAGGGAGGAATTTGGAA
AACGTGAAAATATTACAATCGAACCTTATTAAAGCCGAACCGACTCACATAAATGGCACT
ACAAATGTCAACTTGTTACGAAAAAATATATGTGGAACAAAATTACCAACAAGGAATATG
CCAGTGAACCAGAAGCTAAAAAATATAAAAGCGAAAGACAGAAACCCTATGGACTATAAA
TTAAAATCTTCTTCAAATCCAGAAGTTTGCCGACAGTATTATTATCAAATACCAAACGAT
CAAAGCTATGCGGCATTTCGGGTAAATCCATTAATCCAACATCCATCTGCACCAGGTAAC
ATTGTTTGGAGACCTGTGAACACATTGTCTGTGGTACCCAACATAATAAATCCGTCGCAA
ATGATGGCCTATGATAACAGATATTTGCCACTCAAACAGAATCTTCCGAAAGATCAGTGC
AAATGTAATTGTAAAATTAATAATACACAGGAAATGTCCCCTTATATACCTTACAATGTA
TCAACTGTACCATCAAAATATTTATTGACTATGCCTTTTAGTAATAATTTTGAATAA
Protein sequence:
MKYSVLKQLANERQLKTNDKPATVPREDVQGLSTRYHEKKTRRFRSAFTTDQIKYLEKQF
QKFPYIESGSRRAIASVLNIPERTVKFWFQNRRMKEKKESLIKDLVGEGQSKINGNLTDD
KMDVKTFNYQSHSGHLSYQLKPILVCPDKTDSSSSNVINCSKEFSKSVHEKQSIAGRNLE
NVKILQSNLIKAEPTHINGTTNVNLLRKNICGTKLPTRNMPVNQKLKNIKAKDRNPMDYK
LKSSSNPEVCRQYYYQIPNDQSYAAFRVNPLIQHPSAPGNIVWRPVNTLSVVPNIINPSQ
MMAYDNRYLPLKQNLPKDQCKCNCKINNTQEMSPYIPYNVSTVPSKYLLTMPFSNNFE