| New model in OGS2.0 | DPOGS200565 |
|---|---|
| Genomic Position | scaffold1740:- 19998-23744 |
| See gene structure | |
| CDS Length | 2367 |
| Paired RNAseq reads | 787 |
| Single RNAseq reads | 2000 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009353 (0.0) |
| Best Drosophila hit | CG4975, isoform C (3e-19) |
| Best Human hit | ataxin-10 isoform 2 (2e-18) |
| Best NR hit (blastp) | PREDICTED: similar to Ataxin-10 (Spinocerebellar ataxia type 10 protein homolog) (Brain protein E46) [Apis mellifera] (5e-32) |
| Best NR hit (blastx) | PREDICTED: similar to Ataxin-10 (Spinocerebellar ataxia type 10 protein homolog) (Brain protein E46) [Apis mellifera] (3e-30) |
| GeneOntology terms | GO:0005515 protein binding GO:0005737 cytoplasm GO:0005829 cytosol GO:0007399 nervous system development GO:0008150 biological_process GO:0030425 dendrite GO:0031175 neuron projection development GO:0042802 identical protein binding GO:0043025 neuronal cell body GO:0048471 perinuclear region of cytoplasm |
| InterPro families | IPR019156 Ataxin-10 domain IPR011989 Armadillo-like helical IPR016024 Armadillo-type fold |
| Orthology group | MCL14522 |
Nucleotide sequence:
ATGTCTCGAGACAAAAGTGTGTGGTTCGCTGAAGAAATTTTGTTAGATGCCAAACTTATA
AATTTTCAATTAGAAACTGGAGAATGGGATGCAGTAGAAGAAATGTTGCGTGCTGAAGCG
CAACTCTCTAGAGATGCGGAGACCGGACGATTGCGACCTAAAAAAGCATCGGAATACACT
TTGCGACTCATAGCCGAAGTTTTGCACATCATGCGATTAGATGTGGAACAGGCGTCATAT
AATCGCAGTACCCTTGCCGTGGCTGAGCAATGCCTACGGCTCGTTCGCTCCTGCGCCGCC
GCAGGAACAAAAATGCAAACATACATCTCCAAAGAACTGTCTATACTTGATTCAATGCTG
ATTCTTGCAACGGAATACTTACATCCAAGCATAGAGTTCTTGAATGAAGAATTGCAAAAA
AAATATGAGTCCTGTATGACAGTGTTGGTGCAGACTTTAGGCAACTTAGTGGTCAACAAT
CCATTTAACCAAATAATGATATGGAATAAATTTGACACTATAATCCTAAGTAGTCTGGTC
GGTCAAAATGAAAAAATTGCATCTGCTGCAGCTATGATTGTATACAACATACTTTTGGGA
CAACCAAATGTACTCCCTGATGATGTAATGCTTCTAAATTCTTTAGCTTACATGTATATA
AATGGAAATACAGACTATCCACATTTGATCATTGAATACTTAATCGGTGTGGAGAACACT
TATATAGAGAAACTGTACTCGAAATTGGATCCCGAATGCCGTATGTTAGTACTAAATCTG
GCTTACAATATTCTTATGTCAAATGAATCTCAGGATATAAATGTATCTGTTAACTTTGTC
AAATTCATGGCTCATGAGTTCAAAAGTAAATCGGATTGTATTTTGAAAACCGTTGATAAG
TATGTGAATACTATAGAGCCACAAGAAGTTGTGTTTTTGCTTGAAATCATTGCCACAGCT
TCTAGTATGGATGCTTATATGGACTGTTTGCAAAGTGATACCTCTTTGTTCATTAATTGT
GCTTTTTTGCTACGAGCCATCCATAAGTTGGGCAAAGAGAGTAATAACTTTTTTTCATCT
ATTAACAAGCTGTATGAGGCTACCGGAAAACATTTGGTGAATGATGAAGACATGCCAGCT
GTGAACATTCCTCCTGAGATTCCGCTATGCAAGAACGACTCGGCAGACAATATGCTGTCT
TGCAACGAAACAACATCTGAATGTACTGAGTCAGAAAGTAGTGAGCAATATTTTGAATGC
AACGAAACCCCGGGTTATATTGAAAAGCTAGATGCCTGCACATTAGAAAATCCACCGATG
AAATTTGATATGGACAAAAACTCTAGAGCTTCCTCCGAAGGGAACTCAAATGTCAGAATT
GATAGTGACTTGACTAAAGTTGCATTCAAAAGGAGTAGTTCCGTACCAAAACCAGACGAT
AGAATTCATCAGCTTCCAATAAGAAGGATAAGTCTGGAACATAAAATAGATATAGCTGAT
GATACTGAACCACCATTGATAATTGACACCCAATCGCCCACGGCCAGTATGAACACGATA
GCTGAAGTTATACCGGTCGGGCTTCAGCCGAGGTTGGAGTTACAGGATTCGATGAATGAC
TCGCAGGACAGCTCCCCGAACGATCCGCCGACGGAAATCCATATGGTAGACACCAAAGAC
GTGAAAGCATCACCAAGCGAAATATCACCACCGTTATCAGGAGTGAAACAGGAAAGTGAA
TCACAGAAACAGTCACCCGAAACGCCCAAGGAAGTTAAAAAGAGCCAGAATCTATCGACG
GACTTCGATCTCAGTGAACAGTTACAGAAGATTCTGGGTATAACTTCGGAGAAGACGAGA
GTTGATGCCAGTGATAAAAAATCGGAACCCGCCAAGGAAATTAAAATGTCAGATGACACT
AACAAGATACCCTTGGTGAAAATCGATTCACCTGAAACTCAGAAGACCAGATTAGGAGCT
ATAGATATGACAACTCCAAAGAAATCTATAACAAGCGTGGAAACTGTGGAGAGACATGTG
GCTTTTGGATTCAAGGCATCTCTTGTGAGAACACTTGCCAACCTCTGTTGGAAGAACCAA
GAAAATAAACGACAGATGAGAGAACTCGAGCTCATACCAGTTCTTTTGGATTGTTGCAAC
ATCGATGCCAGAAATCCACTAATAATGCAGTGGGTTATTTTCGCTATTCGCAACTTATGT
GAGAATTGTCCGGAAAATCAGGAAGTGATTTCGAAGTTGACACTTCAAGGTCCAGTTGAC
AACGAAGTCCTTCAGGAAATGGGCCTGACGTTGAATACGGACTCACAAGGAAATACAATT
AAAATTGTGCCCATGACACGAAATTGA
Protein sequence:
MSRDKSVWFAEEILLDAKLINFQLETGEWDAVEEMLRAEAQLSRDAETGRLRPKKASEYT
LRLIAEVLHIMRLDVEQASYNRSTLAVAEQCLRLVRSCAAAGTKMQTYISKELSILDSML
ILATEYLHPSIEFLNEELQKKYESCMTVLVQTLGNLVVNNPFNQIMIWNKFDTIILSSLV
GQNEKIASAAAMIVYNILLGQPNVLPDDVMLLNSLAYMYINGNTDYPHLIIEYLIGVENT
YIEKLYSKLDPECRMLVLNLAYNILMSNESQDINVSVNFVKFMAHEFKSKSDCILKTVDK
YVNTIEPQEVVFLLEIIATASSMDAYMDCLQSDTSLFINCAFLLRAIHKLGKESNNFFSS
INKLYEATGKHLVNDEDMPAVNIPPEIPLCKNDSADNMLSCNETTSECTESESSEQYFEC
NETPGYIEKLDACTLENPPMKFDMDKNSRASSEGNSNVRIDSDLTKVAFKRSSSVPKPDD
RIHQLPIRRISLEHKIDIADDTEPPLIIDTQSPTASMNTIAEVIPVGLQPRLELQDSMND
SQDSSPNDPPTEIHMVDTKDVKASPSEISPPLSGVKQESESQKQSPETPKEVKKSQNLST
DFDLSEQLQKILGITSEKTRVDASDKKSEPAKEIKMSDDTNKIPLVKIDSPETQKTRLGA
IDMTTPKKSITSVETVERHVAFGFKASLVRTLANLCWKNQENKRQMRELELIPVLLDCCN
IDARNPLIMQWVIFAIRNLCENCPENQEVISKLTLQGPVDNEVLQEMGLTLNTDSQGNTI
KIVPMTRN