New model in OGS2.0 | DPOGS213701  |
---|---|
Genomic Position | scaffold607:+ 45072-47834 |
See gene structure | |
CDS Length | 1323 |
Paired RNAseq reads   | 5948 |
Single RNAseq reads   | 15604 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010673 (0.0) |
Best Drosophila hit   | maternal expression at 31B, isoform A (0.0) |
Best Human hit | probable ATP-dependent RNA helicase DDX6 (2e-172) |
Best NR hit (blastp)   | PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia vitripennis] (0.0) |
Best NR hit (blastx)   | PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia vitripennis] (0.0) |
GeneOntology terms    | GO:0004004 ATP-dependent RNA helicase activity GO:0005524 ATP binding GO:0003723 RNA binding GO:0000932 cytoplasmic mRNA processing body GO:0033962 cytoplasmic mRNA processing body assembly GO:0005875 microtubule associated complex |
InterPro families    | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
Orthology group | MCL15606 |
Nucleotide sequence:
ATGATGACTGAAAATAGAATTAGTTCAAGTAATCACGTCGGAAACATGAGCAGTCAGAAA
GGAGAAGTCGATAAAACTGTAGAAGATATTGGGTGGAAAGCAAAATTAAAACTACCCCCC
AAAGACAGAAGACTTAAAACCAGTGATGTAACTGACACAAGAGGAAATGAGTTTGAAGAG
TTTTGTCTTAAAAGAGAAATTTTGATGGGAATTTTTGAAAAGGGATGGGAGAAGCCATCT
CCTATTCAAGAGGCTTCAATTCCCATTGCACTTAGTGGTAAAGATGTTCTGGCCAGAGCA
AAGAATGGTACTGGCAAGACAGGCGCTTATTGTATTCCAGTTTTAGAACAGGTTGATCCA
AAAAAAGATGCTATACAAGCACTTATAGTGGTGCCGACCAGAGAGTTAGCACTGCAGACA
TCACAAATTTGCATTGAACTGGCAAAACACACAGACATTCGTGTAATGGTCACCACGGGA
GGAACTAACTTAAGAGATGATATAATGCGCATTTATCAAAATGTCCAAGTAATAATAGCC
ACACCAGGGCGTATGATTGATCTCATGGATAAACAAGTAGCCAAGATGGACCAGTGCAGG
ATGCTTGTGTTAGATGAAGCGGACAAACTCCTCTCTCAGGACTTCAAAGGCATGTTGGAT
ACTGTTATCTCACGGCTACCAAAAGAACGTCAAATTTTGCTATTCTCAGCAACCTTTCCA
CTAAATGTAAAAAAGTTTATGGAGAAACATTTAAGAGAACCATATGAGATTAATCTCATG
GAAGAATTAACATTGAAAGGAGTCACACAATACTATGCATTTGTACAAGAAAGACAGAAA
GTGCATTGCTTAAATACACTCTTTTCAAAGTTACAAATTAACCAGTCTATTATATTCTGT
AATTCGACCCAGCGCGTAGAGTTGCTCGCTAAGAAGATAACGGAGTTGGGTTACTGTTGC
TACTACATACACGCACGTATGGCTCAGGCGCACCGCAACCGCGTGTTCCACGACTTCAGG
GCGGGGTTGTGTCGCAACTTGGTGTGTTCGGATCTGTTCACTCGCGGTATAGACGTCCAG
GCTGTGAACGTGGTTATAAACTTCGACTTCCCGCGCATGGCGGAGACCTACTTGCATCGC
ATCGGTCGCTCCGGCCGCTTCGGCCATCTCGGTATCGCAATCAACCTCATCACTTATGAG
GATCGCTTTGCGCTTCACCGCATCGAGCAGGAACTGGGCACTGAGATCAAACCTATACCC
AAGGTGATCGATCCCGCCCTGTACGTGTCCCGCCCCGACGAAGACGACTCGGCAGATAAG
TAA
Protein sequence:
MMTENRISSSNHVGNMSSQKGEVDKTVEDIGWKAKLKLPPKDRRLKTSDVTDTRGNEFEE
FCLKREILMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDP
KKDAIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVIIA
TPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDTVISRLPKERQILLFSATFP
LNVKKFMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFC
NSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRAGLCRNLVCSDLFTRGIDVQ
AVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFALHRIEQELGTEIKPIP
KVIDPALYVSRPDEDDSADK