| New model in OGS2.0 | DPOGS215962 |
|---|---|
| Genomic Position | scaffold439:+ 220577-221964 |
| See gene structure | |
| CDS Length | 651 |
| Paired RNAseq reads | 128 |
| Single RNAseq reads | 474 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001077 (1e-40) |
| Best Drosophila hit | loquacious, isoform A (1e-11) |
| Best Human hit | double-stranded RNA-binding protein Staufen homolog 1 isoform a (9e-09) |
| Best NR hit (blastp) | R2D2 protein [Bombyx mori] (2e-55) |
| Best NR hit (blastx) | R2D2 protein [Bombyx mori] (7e-53) |
| GeneOntology terms | GO:0003725 double-stranded RNA binding GO:0031054 pre-microRNA processing GO:0005737 cytoplasm GO:0030718 germ-line stem cell maintenance GO:0048132 female germ-line stem cell division GO:0005515 protein binding GO:0030422 production of siRNA involved in RNA interference GO:0007417 central nervous system development |
| InterPro families | IPR014720 Double-stranded RNA-binding-like IPR001159 Double-stranded RNA-binding |
| Orthology group | MCL18935 |
Nucleotide sequence:
ATGAAGACTGCGGTAACAGTCTTGCAAGAGTTAATGTTAAAATTAGGTTTAGTGCCAGAA
TATGAATGTGTGTCTCAGTCAGGCCCCCAACATCAAGCAATGTTTGAATATCGTTGTACC
GTATATGGTTGTGATGCTTCTGGTCTTGCTCGTTCTAAAAAAGAAGCTAAGCAGGAAGCA
GCACGATATATGTTGCAAAAGCTATTCGCGCGTGGTCTGAATGTGCCTGCCCCTTATGCC
ACAATGCCATGTGAGCAAGAGCGGCCATCTTCACCTCCATCTCCCAACAACAATCCTGCT
CTTGAGCCAGGCCCTTCAGCAGCTACGGGAAGGAGCACACTGCCACTAGACACTCGAAGC
TATGTTGCACTATTGAAGGAGCTAAGCGAACAGTATCATCTTGGAGAGCCACAGTATGAG
CTCGTTAGCGACACAGGTCCTGCCCACCATCGTCACTTCAGCATTCGCGTCAGTTTGGGC
TTACACTCGCGACAGTGTACATCCACAACAAAAAAAGCAGCCCGTCAACTTGCAGCAGAA
CAACTATACACCTATCTTCGTGATAACCTTTCTAGACTCACTGGCGACTTTGTTGAGGAG
GAAGCCTTGGCGCGTGCTCTCGAGAAATCCTTAAAGAAAAAAAGGTTGTAA
Protein sequence:
MKTAVTVLQELMLKLGLVPEYECVSQSGPQHQAMFEYRCTVYGCDASGLARSKKEAKQEA
ARYMLQKLFARGLNVPAPYATMPCEQERPSSPPSPNNNPALEPGPSAATGRSTLPLDTRS
YVALLKELSEQYHLGEPQYELVSDTGPAHHRHFSIRVSLGLHSRQCTSTTKKAARQLAAE
QLYTYLRDNLSRLTGDFVEEEALARALEKSLKKKRL