| New model in OGS2.0 | DPOGS204613 |
|---|---|
| Genomic Position | scaffold827:- 66878-73951 |
| See gene structure | |
| CDS Length | 2325 |
| Paired RNAseq reads | 6265 |
| Single RNAseq reads | 17331 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012171 (6e-07) |
| Best Drosophila hit | karst, isoform B (3e-114) |
| Best Human hit | spectrin alpha chain, brain isoform 1 (1e-49) |
| Best NR hit (blastp) | PREDICTED: similar to karst CG12008-PA, isoform A [Apis mellifera] (2e-173) |
| Best NR hit (blastx) | PREDICTED: similar to karst CG12008-PA, isoform A [Apis mellifera] (2e-154) |
| GeneOntology terms | GO:0030707 ovarian follicle cell development GO:0007009 plasma membrane organization GO:0003779 actin binding GO:0008017 microtubule binding GO:0008092 cytoskeletal protein binding GO:0008091 spectrin GO:0016327 apicolateral plasma membrane GO:0045186 zonula adherens assembly GO:0000910 cytokinesis GO:0006897 endocytosis GO:0016324 apical plasma membrane |
| InterPro families | IPR018159 Spectrin/alpha-actinin IPR002017 Spectrin repeat |
| Orthology group | MCL10080 |
Nucleotide sequence:
ATGAGTGACACCTCCTCTTGTATGTACAACCACAGACAATTCTGGTTCATTAAGCTCAAT
TTTAACACCCAAGAGATCGAAGAGCGGTGTCGTGCGGTGGTGGAGGAGCGCGGTCGCCTG
GCGAACTCCTGGGCTGCGCGGCAGGTGGCCCTGGACCAGCTGATCGACTGGCACTGCTTC
CTAAGGGACGCCAAGCAGTTGCACGCTCTGTGTGCTGCACAGGAAGCAGCACTCGGCAGC
GAAATATCTCCGACCAGCAGCGTGGAGGAGGTGGAACACCAGCTCAAGAAGCACGAGGCC
TTCGAGAAACTGCTGGCGACGCAGGACGAGAAGCTGTCCACCCTGAACAGCCACGGAGAC
AAGCTGTTGCAGCAGAACCACGTGGAGAGCGCCCGCATACAGGAAGAGCTGGCCGCTGTC
AACGATCGTAGGAAGAAGCTGTACGTGGCCGTGGGTGTCCGTCGCGGAGCCTTACTCCGA
GCGCGCGCCCGGGCTCAGTTCACGAGAGACGCCGCTGAAGCCAGGAGTTGGGTGGCCGAC
AAGATGGCGCAGCTGCAGCTCATCACTGGTGAAGTGACGGACCTGGAAGACAAGATCAAG
AAGCTGCAGAGACACCAGGCGTTCACTGCTGAGCTGGCAGCGAACAGGGCGCGGCTGGAG
GAGGTCGGGCAGCTGGCCAAGGAGCTGGAACCAGACAGGGAGGTGGCCAAGGAGCTGGAG
CAGCTGGAACGAGAGTGGAGGACGCTGGAGGACGCCGCAGAACAAAGAGGTCGCGGGTTA
GAGGAGGCCCAGGACATTCTGGAGTTCAACCAGCACCTGGACAAAATAGAAGCCTGGATA
CGTGACAAGGAACTGATGGTCCAAGCCAACGAGACCGGCCGTGATTACGAGCACTGCACC
GCCCTGCTGCGTAAGCTGGATGACCTGGACAGCGACATGAAGGTAGACGACAAACACGTC
AAGAGCGTCCAGGCGTTGGCTGACAAGCTGTTGCAGCAGGGTCCAACACAACACGCTGCC
AACGTCGCCGCCCGGCGTGACGGAGTGCTGCTCAAGTGGCGCGCGCTCACTGGAGCGCTG
CAGCGCTACAGGGAGAGGCTGGCGGCAGCGCTGCAGCTACACTCCTTCAACAGGGACGTC
CAAGAGACATCGGAGCGTTTGTCCCGCAAGGCAGCCCTGTTCCGCAGCGAGGAGTGCGGC
CGGGACCTCAGCGCGGCCCACGAGCTGCGCAGACGCCTCGACGCGGCGGTCCGGGAAGCC
GGGACCATAAGGGACAGGATACACCAGCTGAAGAACGACGGTTCAGCGCTGGCGAGGAGT
CATCCTGAACAGCGAGAGATAATCGAGTCCCAGCTGTCGCAGCTGGACGAAGGCTGGGAA
CAGCTGCAAAAGCTGGCGGCCGCGCGCTCCGACATGCTGGACGACGCCGTCAAGGAACAC
AAGTTCGAAGAAAACCTTAAGGTTAGCGATGTCATTACATCATCAGCTGTGGTTGGGACT
GGAGTTATTAGTGATGACTTGGCACGGCTGTGTGTGTGCGCGTGCGAGTTGGAGGTCTGG
GTGACGGAGACGGTGAAGCGCCTGGACCGCGCGGAGCCCGACAGCGTCACGGACGCTCAG
GCACAGCTGGAACACCTGCACGAGACCAAGGCGGAGATAGACGGTCGCCAGAAGGCTATA
TCATCACTCCAGAAGGAAGCTGAGCAGGCCCAGGAGTTGGAGAAGGTGAAGCGTGTGGAG
AAGCTGGCAGCTGGACTGGACCAGGCCTGGCTACAGAGGAAACAGTATCTCACGCAGGCC
CACTCACTGCAAGTGCTGAAGGAACAGGCCCAGGCCGTCGAGGACTGGCTCGCTGGGAAA
GAGGCCTTCCTCCACAACGACGACCTCGGAGACAGCCTCGACGCTGTTGAGACACTGATC
CGCAAGCACGGCGAGTTCTCCAAACTGCTGGAATCCCAGATGGGCAAGGTGCTGGAGCTG
GAGAAGTACGCCGAGTCCATATCGGAGGGGCACTACAATAGAGACTACATAATGAGGAGG
GTGGCTGCCGTGAGGGCGAGGGCGGACCAGCTCAAGCTGTCGTGCGTGTCACGGGCCGAG
CGTCTGCAGCAGGCGTTGCAGCTGCAGCAGCTGCTGAGGGACGTGACACACGCGAGGGAG
TGGATCGACCTCAAGATGCAGATCGCCAACGACGCTAACTACAGGGAGCTGTCGAACCTG
CAAAGCAAGATACAGAAGCACACGGCCTTCGAGTCCGAGCTGGCGGCCAACAAGAAGCGG
ATCGACGACGTGGCTACAGCTGGGGAGGACCTCATCGGTGAGTGA
Protein sequence:
MSDTSSCMYNHRQFWFIKLNFNTQEIEERCRAVVEERGRLANSWAARQVALDQLIDWHCF
LRDAKQLHALCAAQEAALGSEISPTSSVEEVEHQLKKHEAFEKLLATQDEKLSTLNSHGD
KLLQQNHVESARIQEELAAVNDRRKKLYVAVGVRRGALLRARARAQFTRDAAEARSWVAD
KMAQLQLITGEVTDLEDKIKKLQRHQAFTAELAANRARLEEVGQLAKELEPDREVAKELE
QLEREWRTLEDAAEQRGRGLEEAQDILEFNQHLDKIEAWIRDKELMVQANETGRDYEHCT
ALLRKLDDLDSDMKVDDKHVKSVQALADKLLQQGPTQHAANVAARRDGVLLKWRALTGAL
QRYRERLAAALQLHSFNRDVQETSERLSRKAALFRSEECGRDLSAAHELRRRLDAAVREA
GTIRDRIHQLKNDGSALARSHPEQREIIESQLSQLDEGWEQLQKLAAARSDMLDDAVKEH
KFEENLKVSDVITSSAVVGTGVISDDLARLCVCACELEVWVTETVKRLDRAEPDSVTDAQ
AQLEHLHETKAEIDGRQKAISSLQKEAEQAQELEKVKRVEKLAAGLDQAWLQRKQYLTQA
HSLQVLKEQAQAVEDWLAGKEAFLHNDDLGDSLDAVETLIRKHGEFSKLLESQMGKVLEL
EKYAESISEGHYNRDYIMRRVAAVRARADQLKLSCVSRAERLQQALQLQQLLRDVTHARE
WIDLKMQIANDANYRELSNLQSKIQKHTAFESELAANKKRIDDVATAGEDLIGE