| New model in OGS2.0 | DPOGS204613 |
|---|---|
| Genomic Position | scaffold827:- 55852-66040 |
| See gene structure | |
| CDS Length | 3585 |
| Paired RNAseq reads | 14074 |
| Single RNAseq reads | 34502 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012171 (5e-06) |
| Best Drosophila hit | karst, isoform C (3e-82) |
| Best Human hit | spectrin alpha chain, brain isoform 3 (2e-44) |
| Best NR hit (blastp) | PREDICTED: similar to beta chain spectrin [Nasonia vitripennis] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to beta chain spectrin [Nasonia vitripennis] (0.0) |
| GeneOntology terms | GO:0030707 ovarian follicle cell development GO:0007009 plasma membrane organization GO:0003779 actin binding GO:0008017 microtubule binding GO:0008092 cytoskeletal protein binding GO:0008091 spectrin GO:0016327 apicolateral plasma membrane GO:0045186 zonula adherens assembly GO:0000910 cytokinesis GO:0006897 endocytosis GO:0016324 apical plasma membrane |
| InterPro families | IPR018159 Spectrin/alpha-actinin IPR001849 Pleckstrin homology domain IPR001605 Spectrin/pleckstrin-like IPR011993 Pleckstrin homology-type IPR002017 Spectrin repeat |
| Orthology group | MCL10080 |
Nucleotide sequence:
ATGGCGGAATATCGTGATTCCGGTGATTCCGCGTCCAAACTACGTAGGTCCCGGCTGCAG
GAGGCTTACCAGGCGCGCGTGTACCTCCGGGGGCTGGACGACTTCACCGCCTGGCTTGAT
GACGTGGAGGCACAGCTGCTTAGCGAGGATCACGGTAAAGACCTCTCATCAGTGTCGGCG
CTGCTGAAGCGTCACTCTCGTCTGGAGGCGGCTGTGGGGGCGAAGGCCGACACCGCGACG
CAACTGGCCGACACCGCCAGACATCTCGCAGACAACAAACACTTCATGGCCGACGAGATC
CTCGAGAAAGCTGACACTGCTGTCAAGAGATACAAACAATTGCAAGAACCGATGTCCATC
AGGCGGGAGAACCTCAAGGACGCTGAATTACTGCACCGCTGGGAGAGAGACGCGCACGAG
GAGATGGCCTGGTTAAAAGAGCACGAGGCAGCGGTATGGTCCGAGGAGGCGGGCGGGTCC
CTGCCCGAGGCGCAGGCCCTGCTGAAGAAACACCAGGCGCTCGGAGCCGAGCTGGGCGCC
AGAGAGGCGACGATCTCTGCGGTGATCAGCCGTGCCAGCGCGCTGTCTCGAAGGGGACAC
TTCGCCAGCGCTGTGCTCGAGCAACGGAGTCGGGAGCTGAGGGCGGCGCTGAGGACCATC
ACCGAGAGGGCGGCGCACAGGGAGGCCGCGCTCAGGGAACGATGCGACCTACTACAGCTG
CTGAGCGAAATCTGGGAGGCGGAGGCCTGGGTGGCGGAGCGCCGCGGGGCGATCCTCGGC
GCTGAGCTGGCTCGGGACGAGGACTCCGCCCTGGCCTTGGCCAGGAGACTGGAAGCCCTG
CAGAGGGAACTGCAGGCCTTCCAACCAACCATCGCGAGGATCGAGAAGAACTACCAGGAT
CGTTCCTACGAAGACGAGCAGGTCCGCCGCAAGCTGGACGAGCTCAAAGCTTCCTACGAG
GAGATGAACCTGCTGTCGGCCAAGCGTCAGCAGAGGTTGCAGCAGAGCCTGAAATATTTC
AAGTTCGTGCAGGAGTGTGAGGAGGTGCAGGAGTGGATCGGCGAGCAGATGACGGTGGCG
GCCAGCGAGGAGTACGGCCTGGACGTGGAGCACGTGGACACGCTGCAGCAGGCCTTCGAC
TACTTCATGCAGCAGCTGCATGCAAACGAGGGCAGGATCGAGGCGGTCTGCGAGGCGGGG
GCGGCACTCCTGGAAGAGAACACGCCAGAGGAGGAAAGAGTGAAGCAGAAGATAGAAGAC
ATAAGAGGACTGTGGGACGACCTCAAGGAGCTGGCTCTGGCTAGGCAGGAGGCGTTGGCT
GGTGCGCGTCAAGTCCACGAGTTCGATCGCAGCGCTGAGGAGACGGTGGCCTGGGTCAAT
GAGAAGGAAGCGGCGCTTGCAGCGCTGTCGTCCCCAGCAGCCTCTCAGTTGCATCAGCTT
AAAGCGCTGCGAGCGGAGCTGGGGGCTATCAGAGACCAGCACCAGATGTTGAGAGACAGG
GCTTCCAGTCTCGGTGAAGCCTTCCCCGACGCCAAGGAGCACGTGCTGTCTAAGCTGGAG
GAGGTGACTGAAGCGCTGGAAGCGCTGGAGGAGAAGGCGGCCCACAGCGAACACCAGCTG
GAACTGGCTGATCAGCTTAAAGCGTACTTCGACAAATACCAGGAGCTTATGGCTTGGAAC
AACGAGACCCTCGCCCGCGTGACCGCTCCCGAGCTGTCTTCTGACGTGGCGGGCGCTGCA
CGACTGCTGGCCAGACACCAGGACCTCGCCGCTGAGATACACGCCAAGGATGAGAGCTTC
CAGACCTTCTATGACGACGGTGAGAAGTTGGTCCGCGAGGGTCACTTTATGTCCCAGGAG
GTGGAGACGAGGATGTCGTCTCTGAGGGCTCGTAGGGCTGCGCTGGACCACGCCTGGAGC
GCCCGGAACAGGATATACGAGCACCACCTGGACGCACTCATGTTCTTAAGGGACGCTGAT
GCGCTGGACCGCTGGATATCTTCCAGAGTGCCTCTCGTCCGTGATGGAAAATATGGTGAA
AGCCTGGCGCAGACGGAAGAGCTGATCAACAGGCACCGAGACTTGGAGGAGACCATCGAC
GCGCAGAAGGAGAAGTTCCTCGCACTCAAACGGATCACGCTGATCGAGAAAGCCTTTAAA
GATCAGAAGAATGAAGAGGAGGCTGCCCGCAAGCAACACCTGGAGAGACAAGAGGCTGAG
AGGATGCAGCTGGTGCGGAAGAGAGAAATGGAGAGGATCGCGGAGGAGCGGCGGAGGGAG
ACAGAGGAGCAGAGAGGAACTGCTGTACAGGTGGAGCGTCAGTTATCCAGCTCCGGTATG
AACAGCAGCCTGGCTGGCTCCGTGGAGGAGACCCTCAGCCCCGCGCCGCAGTTCGACCGC
CTCCCGAAACCGGATGTTCACGTCAAGAGAGCTGAGAGCATGAGCGTGGTGAAGACTCCT
AAACGGACACCGTCGTTCACGACGCGCAGGCGGACCCAGAGCTTCAGGCGGCACCGGAAA
CACGATGACCTGCCTCCGGTCGAAATAGAAGGATACTTGGAGCGCAAGCAGGAGGCGGGT
TCGGGCGGCGTGAGAGCGGCCGTGAGGAGTTGGAGGTCGTACTACGCCGTGCTGTGCGGT
CAACTGCTCTGCTTCTTCAGGGACCAGGAGGATTTCGCCAGCTCCAAGGCCGCGGCGCCA
CCTGTCGCTATACTCAATGCTCGTTGCACGCCCGCCAGCGACTACACCAAGCGGTCGCAC
GTGTTCCGTCTGTCGTGCGCTGATGGGGCGGAGTACCTCTTCTCCTGCGGGTCCAGGGAC
CTGCTCGCGGAGTGGGTCGCCAAGCTAGCCTTCCACGCAGCGCTGCCGCCCCAGCTGCAA
CTGACGCCCTACAACGCCGAGGAGTCACCTACAGCGGACGTGAGGAGGAGATTGCAGCAG
AACGCCTCCTCGTCATCCTCGGCCGCTTCCTCACCGGAACCCCAGCGTCACAGGACCCAG
GCCGAGATACTGCAGGAACATCGCACCAGCCAGAAGGAGAGTCAGGCCGGTAGAGAAGAT
AACAAGAGTCGAGTCTCCGCAGACAGGCATATTGAGTCTACAGTGCTGCCCTCTCTGCCG
CCGAGACAGCCGCCGGCAGTGGACGATACTGCAGATGTGGTGCTCAGCCGAGGCCCCGCC
GTCGCCCCCCGGCCCGCCCGTGGTCAGGCCCCCCGCGGGGCCCGACAGACCCCCCGCGCT
GCCGGAGAGAGACAGGGAGAAGGTGACCAACCTGGTGAACAACTACCAGAGGATGACGAG
GAGCTACCAGGAGAGGGACGACCGGAACTGGCAGGAACAGTACGGGGGAGACTCGGCTTA
CGGAGGCAGCAGTCGACCGTCATCAGTATCTGGAGGGTCACCAGCTCTGGACAACAGACC
GGCTTCCAGGTCCTCGGGAGAATCAGAGCTGTCAGTCGGCGGGAAAGAGAAGAAAGACAA
GAAGGGAGTGTTCGGTGGACTGTTCAGCAGGAAGAAGAGGCCGCAGAGTCACATGTAGAG
GACAGAAGAGAAGATACAGACGATACAAGCATAATAAATATATAA
Protein sequence:
MAEYRDSGDSASKLRRSRLQEAYQARVYLRGLDDFTAWLDDVEAQLLSEDHGKDLSSVSA
LLKRHSRLEAAVGAKADTATQLADTARHLADNKHFMADEILEKADTAVKRYKQLQEPMSI
RRENLKDAELLHRWERDAHEEMAWLKEHEAAVWSEEAGGSLPEAQALLKKHQALGAELGA
REATISAVISRASALSRRGHFASAVLEQRSRELRAALRTITERAAHREAALRERCDLLQL
LSEIWEAEAWVAERRGAILGAELARDEDSALALARRLEALQRELQAFQPTIARIEKNYQD
RSYEDEQVRRKLDELKASYEEMNLLSAKRQQRLQQSLKYFKFVQECEEVQEWIGEQMTVA
ASEEYGLDVEHVDTLQQAFDYFMQQLHANEGRIEAVCEAGAALLEENTPEEERVKQKIED
IRGLWDDLKELALARQEALAGARQVHEFDRSAEETVAWVNEKEAALAALSSPAASQLHQL
KALRAELGAIRDQHQMLRDRASSLGEAFPDAKEHVLSKLEEVTEALEALEEKAAHSEHQL
ELADQLKAYFDKYQELMAWNNETLARVTAPELSSDVAGAARLLARHQDLAAEIHAKDESF
QTFYDDGEKLVREGHFMSQEVETRMSSLRARRAALDHAWSARNRIYEHHLDALMFLRDAD
ALDRWISSRVPLVRDGKYGESLAQTEELINRHRDLEETIDAQKEKFLALKRITLIEKAFK
DQKNEEEAARKQHLERQEAERMQLVRKREMERIAEERRRETEEQRGTAVQVERQLSSSGM
NSSLAGSVEETLSPAPQFDRLPKPDVHVKRAESMSVVKTPKRTPSFTTRRRTQSFRRHRK
HDDLPPVEIEGYLERKQEAGSGGVRAAVRSWRSYYAVLCGQLLCFFRDQEDFASSKAAAP
PVAILNARCTPASDYTKRSHVFRLSCADGAEYLFSCGSRDLLAEWVAKLAFHAALPPQLQ
LTPYNAEESPTADVRRRLQQNASSSSSAASSPEPQRHRTQAEILQEHRTSQKESQAGRED
NKSRVSADRHIESTVLPSLPPRQPPAVDDTADVVLSRGPAVAPRPARGQAPRGARQTPRA
AGERQGEGDQPGEQLPEDDEELPGEGRPELAGTVRGRLGLRRQQSTVISIWRVTSSGQQT
GFQVLGRIRAVSRREREERQEGSVRWTVQQEEEAAESHVEDRREDTDDTSIINI