| Genomic Position | scaffold13138:- 230-5861 |
|---|---|
| See gene structure | |
| CDS Length | 3216 |
| Paired RNAseq reads | 462 |
| Single RNAseq reads | 2372 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008012 (1e-108) |
| Best Drosophila hit | cag (1e-10) |
| Best Human hit | tigger transposable element-derived protein 4 (3e-75) |
| Best NR hit (blastp) | PREDICTED: tigger transposable element derived 6-like [Saccoglossus kowalevskii] (5e-99) |
| Best NR hit (blastx) | PREDICTED: tigger transposable element derived 6-like [Saccoglossus kowalevskii] (2e-95) |
| GeneOntology terms | GO:0005634 nucleus GO:0003677 DNA binding GO:0045449 regulation of transcription GO:0000775 chromosome, centromeric region GO:0003676 nucleic acid binding GO:0005575 cellular_component GO:0003674 molecular_function GO:0008150 biological_process |
| InterPro families | IPR009057 Homeodomain-like IPR006600 Pogo transposase / Cenp-B / PDC2, DNA-binding HTH domain IPR012287 Homeodomain-related IPR004875 DDE superfamily endonuclease, CENP-B-like IPR004906 Pogo transposase / Cenp-B / PDC2, subgroup, DNA-binding HTH domain IPR006695 Centromere protein Cenp-B, DNA-binding domain 1 IPR002893 Zinc finger, MYND-type |
| Orthology group | MCL17228 |
Nucleotide sequence:
ATGGCTCCTAGACGCACGTTTACTGTTAAAGAAAAGGTGGAAATCATTTCAAAATTGAAA
AATGGTGCAAACAATGCTGATTTGTGCAAAGAATACAAAGTTTCGCATTCAACAATATCT
ACGATGTGGAAAAACCGTGATAAAATATTAGAGTGCTTTGAGTCCAAATCCTTAAAAATT
AAGAAAAACCGCAAGCCGACGCATCAAGATGTTGAAAAAGCTCTTCTAGTGTGGTTCAAA
GCTCAAAGAAGCCAAAACGTACCTGTGAGCGGTCCTCTGCTGCAAGAAAAGGCTAATCAT
TTTGCCAGACTGTTTGGAAAAATAGATTTTAAGTGTTCGGAAAGCTGGATATACCGGTTT
CGTCAACGGCACGATATTGTAGTAGGCAAAGTTTGTGGAGAGGCCGCAAGCGTATCGCAT
AGTGACTGTGACAACTGGCTAAAAACAGTTTTCCCAAAATTGACTGAAGGTTACACTGAT
AGCCAAATATGGAACGCAGACGAGACAGGTTTGTTTTTTAAGCTAACGCCTGAAAAAACA
TTGAAATTTAAAGGAGAAAAGTGCGTAGGTGGAAAATTATCAAAAGATAGAATCACCGTG
CTTGTTGCATCAAGCATGGCAGGGGAAAAAAGAAAATTATTGGTCATAGGCAAGGCGAAA
AAGCCCAGGTGTTTCAAAAATGTTAAATTTTTACCGGTTGATTACGAAGCAAATAGAAAG
GCCTGGATGACTTCAGATATTTTCGAAAAAGTTCTACGAAAATGGGACTCCCAGTTAAGA
AATAACAAAAAGAAGATCATTTTATTTATTGACAATTGCCCAGCTCATCCTAAAATTGAA
AATTTGACCAACAGAAAACTGGCATTTTTACCACCAAACACAACATCAGTGATCCAACCT
ATTGATCAAGGGATAATTAAAACTCTCAAAAGTCATTATCGGAAGATTTTAGTACAGAAA
ATGATGAACGACATTGAAAAAGCGGCAGGCTCATTTTCCGTTAATCTTTTAAATGCTATT
GAGATGACAACTACGGCATGGGCTCGAGTGACTCCGGAAACGATCAAAAAGTGTTTTCTA
CACGCTGGGTTCTGTAAATCTTCGGTTATCACAACAATTGACGACGATTCTGACGATGAG
TTGGACATACCATTGGCACAGCTGACAACATCGTCAAGCGGAACAAATGTTCCGGATTGG
GAAACATATGTCGATATTGACAGTCAGCTTATCACCACTAGCAATTTGACTGATAATGAA
ATGGTTGAAACTGTTGCTTCATCACCTACGACGCAAGATGAGGAAAATGAGGAGGAAGAA
GAAGATGACAAGGAAGGTGAGATTCCTACAACTGAGGATGTGTTATGTGCAGTGACAAGG
CTCAAAAGATATTGTCTATTTGGTGATGGAAAGGATAATATAGACATTGAAGGAGACGAG
CAACTGAACAAACGGAGAGCCAGTCAAGATATAGACACTGAATCTCCTCTGAAGAAATTA
TGCGCGGAAGTCGAGAAGACGTTCCCCCAGCATGACACGGCGACCAAGAACAACGTGGAC
GAAATACAGAGGCACACCGAGCAACTGCTGTCCGAGATACAGACGCTGAGGGAGCTGGCG
CAGAAGAAGGAGCACGAGTGGAACAACATCCTGCACCTCAAGAAAGTCAAGGAGGAAATA
CTGCTCAGGCTGCTCAGGCGGAAGCAGGTGCTGGCCTTCGAGAAGAGCGCCGACGTCAAC
GGCAGCGAGCGGACCGACCCCTTCGACTACCTCAACCAGGCCAAGAACCTGGCCATCGAT
AAGAGCGATGACATATCCGGCCTGGCGATCAAACAGCCGGGCTCCGCCATCGTCAACCCC
ATCATGCAAGCGCCCATCATGCCCGTGACGTCACACTTCAACCCCATGTCAGGGCTGCCA
CCGCCCTACGACAAGGCCGCTCACTTGCAGTCGATGCCCAAACCCAACCAACTATTCCCG
CAGGCTATGATGATGCCGGGCCATCTGCAAGGTTTCCCCAGGGATATGAACGGTCAGCTG
CCATCTAGCTACGGAATGCCGATGGGGCGTCAGGGGCCGACCAAAGACGTGAAGAGCATT
ATAGCCGATTACAGGCAGAGGAATCCTGAGATAACTCCTCGCAGGGGGAGGCGGATGAAG
CCCATCGTCAACCCCAGCATGATGAACCAGCCGCGACCGATAGCCCCCAAGGTGGACGCC
ATGAACAGTCTCAGTAATCTCAACATGCTGTTCAACAATTTGGACATGGTGAGTTTATAC
GAACTGTCCGTGGACCGAGTGATTCCAGGAACACTACACGGAATGACCGTTACCGTTCGC
AGACCGGGTCTGTTGCATGTTGTGTTCAGTATGAAGAATCAGAAGGCGATGATAGAGCGT
CTGCAGCAGATCCAAGCGGGCGGGCTGCCCAACGGTCTGTCGTTCAAGGACGTGCTGGTG
CAGGTCGCCAACATGCAGCAGAACAACGCCGGCCTCATGGCCGCCAGGGCCCACGACGTG
AACAGGCCCGAGCGACGGCGGCAGGAGCGCGGCGAGGACCCGCCGGCCCCGCCCGCCCCA
CCCGCTCCACCCAAACAGGCGGACAGGCTCGCCGCCTCCAGCCCCCGCCTGCCGCCGCCG
CCGCCATACCCGGAGATATCGCTCCTGCCGGTCAGCACCGCCCAGGACGCCTCGCACACG
CAGCAGAACTCGCTGCTCCACGGAATACTGACCAAGCTTGAATGGGTGTTGCCAACCTTC
CAGCAGGCGTCTCCCGCGTCTCAGTGTTACTCCCCGACGTTGGCTAAACTGCTGACGTCG
CCGGAACGGAAACAGAGCGCTCCGCCGTTGCCAACTTTCGGTCAGGCCAAGAACTGCGGC
GAGATCACGATAACGCCGGTGCAGCCCGCGCCGCCGGACGCGGAGAAGACGGAGGTGGTG
CAGCTCGAGGAGGAGGAGAGCGGCGCGTCCGAGGAGTCCGCGGGCTCGGCGTCCGCGGGC
TCGGGCTCCGGCTCGGGCTCCGGCCGGCTGGTCATCGACGAGGGCAACGACGAAGCGCCC
ACCTGCCAGGGCTGCCGCTCGCGACTCGCGCAGTTCGTGTGCGCCGGCTGCGCCAACCAG
TGGTACTGCTCCAGGGACTGCCAGGTCGACGTCACACTTATACATTTATCACTCTCGTTC
GTTGACATATATCTACTTATATTATGTAAGATGTGA
Protein sequence:
MAPRRTFTVKEKVEIISKLKNGANNADLCKEYKVSHSTISTMWKNRDKILECFESKSLKI
KKNRKPTHQDVEKALLVWFKAQRSQNVPVSGPLLQEKANHFARLFGKIDFKCSESWIYRF
RQRHDIVVGKVCGEAASVSHSDCDNWLKTVFPKLTEGYTDSQIWNADETGLFFKLTPEKT
LKFKGEKCVGGKLSKDRITVLVASSMAGEKRKLLVIGKAKKPRCFKNVKFLPVDYEANRK
AWMTSDIFEKVLRKWDSQLRNNKKKIILFIDNCPAHPKIENLTNRKLAFLPPNTTSVIQP
IDQGIIKTLKSHYRKILVQKMMNDIEKAAGSFSVNLLNAIEMTTTAWARVTPETIKKCFL
HAGFCKSSVITTIDDDSDDELDIPLAQLTTSSSGTNVPDWETYVDIDSQLITTSNLTDNE
MVETVASSPTTQDEENEEEEEDDKEGEIPTTEDVLCAVTRLKRYCLFGDGKDNIDIEGDE
QLNKRRASQDIDTESPLKKLCAEVEKTFPQHDTATKNNVDEIQRHTEQLLSEIQTLRELA
QKKEHEWNNILHLKKVKEEILLRLLRRKQVLAFEKSADVNGSERTDPFDYLNQAKNLAID
KSDDISGLAIKQPGSAIVNPIMQAPIMPVTSHFNPMSGLPPPYDKAAHLQSMPKPNQLFP
QAMMMPGHLQGFPRDMNGQLPSSYGMPMGRQGPTKDVKSIIADYRQRNPEITPRRGRRMK
PIVNPSMMNQPRPIAPKVDAMNSLSNLNMLFNNLDMVSLYELSVDRVIPGTLHGMTVTVR
RPGLLHVVFSMKNQKAMIERLQQIQAGGLPNGLSFKDVLVQVANMQQNNAGLMAARAHDV
NRPERRRQERGEDPPAPPAPPAPPKQADRLAASSPRLPPPPPYPEISLLPVSTAQDASHT
QQNSLLHGILTKLEWVLPTFQQASPASQCYSPTLAKLLTSPERKQSAPPLPTFGQAKNCG
EITITPVQPAPPDAEKTEVVQLEEEESGASEESAGSASAGSGSGSGSGRLVIDEGNDEAP
TCQGCRSRLAQFVCAGCANQWYCSRDCQVDVTLIHLSLSFVDIYLLILCKM