| New model in OGS2.0 | DPOGS205952 |
|---|---|
| Genomic Position | scaffold20:+ 252735-255750 |
| See gene structure | |
| CDS Length | 1491 |
| Paired RNAseq reads | 676 |
| Single RNAseq reads | 2263 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002837 (0.0) |
| Best Drosophila hit | Prp19 (0.0) |
| Best Human hit | pre-mRNA-processing factor 19 (5e-174) |
| Best NR hit (blastp) | wd-repeat protein [Aedes aegypti] (0.0) |
| Best NR hit (blastx) | GG20970 [Drosophila erecta] (0.0) |
| GeneOntology terms | GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005681 spliceosomal complex GO:0004842 ubiquitin-protein ligase activity GO:0016567 protein ubiquitination GO:0000151 ubiquitin ligase complex GO:0005875 microtubule associated complex GO:0071013 catalytic step 2 spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR013083 Zinc finger, RING/FYVE/PHD-type IPR015943 WD40/YVTN repeat-like-containing domain IPR020472 G-protein beta WD-40 repeat IPR019775 WD40 repeat, conserved site IPR019781 WD40 repeat, subgroup IPR013915 Pre-mRNA-splicing factor 19 IPR011046 WD40 repeat-like-containing domain IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR003613 U box domain IPR001680 WD40 repeat |
| Orthology group | MCL12199 |
Nucleotide sequence:
ATGGCTCTTTATTGTGCAATATCTAATGAAGTGCCAGAGGTTCCCGTCGTCTCCCCTTCG
TCAGGATCAGTCTTCGAAAAGAGAATAATAGAGAAGTATATTATTGAAAATGGGGTAGAC
CCTATTAGCGGTAAAGAGCTGAGAGTGGAAGACTTGATTGAAATAAAAACTCCAGCCATA
GTGAAACCTAAGCCTCCAAGTGCTACATCTATTCCCGCTACACTCAAGAGTATGCAGGAC
GAGTGGGATGCACTCATGCTGCACACCTTCACTCAGAGACAACAACTACAGACGGCCCGA
CAGGAGTTGAGTCACGCCCTGTACCAGCACGACGCCGCCTGCCGCGTCATCGCCCGCCTC
ACCAAGGAGGTGACGGCGGCCCGCGAGGCGCTCGCCACGCTCAAACCTCAGGCCGGCCTC
GCCGCGCCGCTCGGCCGATCAGTGGAGGCTGCGGCAGCGGGCGCGGCGGCTGTGGGTATG
TCTCCGGAAGTGGTGTCCCGTCTCCAGGACCGCGCCACCGCCCTCACACAGGAACGCAAG
CGCCGCGGCCGCACGGTTCCTGAGGGACTCGTCGGACCCGATACCATACGGTCCTTCGTC
ACGCTCGCCTCACATCCCGGTCTCCACTCGGCGAGCGTGCCCGGGATCCTGGCCCTGGAC
ATCAACCCGTCGGACCACAGCCGCATACTGACGGGAGGCAACGACCGCAACGCCACCGTC
TTCAACAAGGACACGGAGCAGGTGGTGGCCATCCTCAAGGGACACACCAAGAAGGTGACG
CGCGTCATCTACCACCCCGACGAGGACACCGTCATCACCGCCTCGCCCGACCACACCATC
CGAGTGTGGAACGTGCCCACGTCGCAGACGACGGTGCTGCTGCGGTCTCACGAGGGTCCA
GTCACAGGCCTGTCTCTTCACCCCACCGGGGACTACGTGCTGTCCACCTCCACCGACCAG
CACTGGGCCTTCTCCGACATACGCACTGGCCAGCTGCTCACTAAGGTGAGCGACGCATCC
GGAGTGAGTCTCACGACGGCGCAGTTCCACCCCGACGGTCTGATCTTCGGCACCGGCACG
GAGAACTCGCAGGTGAAGATCTGGGACCTCAAGGAGCAGAGCAACGTGGCCAACTTCCCT
GGGCACGTGGGACCCGTCACATCCATCTCCTTCTCCGAGAACGGCTACTACCTGGCCACG
GCGGCCGAGGACGCGTGCGTCAAGCTGTGGGACCTGCGCAAGCTGAAGAACTTCAAGAGC
ATCCAGCTGGACGAGGGCTACGTGATCCGCGAGCTGCGCTTCGACCAGAGCGGCACGTAC
CTGGGCGTGGCGGGCTCGGACGTGCGCGTGTTCCTGTGCCGCCAGTGGCAGGAGCTGCGC
GTGCTGGCCGACCACACGGCCGCCGCCACCGGCCTGCGCTTCGGCCGCGACGCCGCCTAC
CTCGCCTCCACCTCCATGGACCGCACGCTCAAGATATACGGCCTGCAGTGA
Protein sequence:
MALYCAISNEVPEVPVVSPSSGSVFEKRIIEKYIIENGVDPISGKELRVEDLIEIKTPAI
VKPKPPSATSIPATLKSMQDEWDALMLHTFTQRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLAAPLGRSVEAAAAGAAAVGMSPEVVSRLQDRATALTQERK
RRGRTVPEGLVGPDTIRSFVTLASHPGLHSASVPGILALDINPSDHSRILTGGNDRNATV
FNKDTEQVVAILKGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTSQTTVLLRSHEGP
VTGLSLHPTGDYVLSTSTDQHWAFSDIRTGQLLTKVSDASGVSLTTAQFHPDGLIFGTGT
ENSQVKIWDLKEQSNVANFPGHVGPVTSISFSENGYYLATAAEDACVKLWDLRKLKNFKS
IQLDEGYVIRELRFDQSGTYLGVAGSDVRVFLCRQWQELRVLADHTAAATGLRFGRDAAY
LASTSMDRTLKIYGLQ