| New model in OGS2.0 | DPOGS204606 |
|---|---|
| Genomic Position | scaffold1676:+ 7882-18413 |
| See gene structure | |
| CDS Length | 1200 |
| Paired RNAseq reads | 704 |
| Single RNAseq reads | 2140 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001827 (7e-165) |
| Best Drosophila hit | orb2, isoform C (2e-140) |
| Best Human hit | cytoplasmic polyadenylation element-binding protein 2 isoform E (1e-136) |
| Best NR hit (blastp) | PREDICTED: similar to orb2 CG5735-PB [Tribolium castaneum] (4e-152) |
| Best NR hit (blastx) | orb2 [Tribolium castaneum] (7e-154) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0005575 cellular_component GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0007616 long-term memory GO:0008049 male courtship behavior |
| InterPro families | IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif domain |
| Orthology group | MCL11562 |
Nucleotide sequence:
ATGATGCATTTTTTTCAGTCCATTGAGTTAAGCCACAATGAGATTGGTCGGGAGGCTTGC
ATGCAACTGGTTGAGGCTCTGACAATACAACCGGGGGCCAAGGATAGACTGACGAGAGTT
AATCTAGCCGGCAACAGTTTGGGTGGAGCGGCCAATAAGAAAATCATGAAGGATAAGCTG
GGAGCCTCCGCTGAACTCAGCGATGGGGAAGGAAGTGACGAGGAATGCAAGTCTCCGTTT
TTTCCCGGAGTGGAGGAGGCGGGTGTTGCTAGCGCGGCCGCCGGTTCACCCTCGGGCCCC
GCCGACCAGGCGCAGGACGTGGTCTCACGGCTGAGCGCTGCCGGTCTGTCGATGTGCGTG
TCGGCCCTGGGCTCGCCGGCCCGCTCGTCGCCCGTGTCCGCGGGCTCGGAGCACGGGGAG
CGGTTTAGTAGGAAGGTGTTTGTTGGGGGACTCCCCCCGGACATTGATGAAGATGAGATA
ACATCGTCCTTCCGCCGCTTTGGTCCATTGGTGGTGGACTGGCCTCACAAGGCTGAGAGC
AAGAGCTACTTTCCGCCCAAGGGATACGCATTCCTACTGTTTCAGGATGAGAGCTCGGTT
GCGGCTCTGATGGAGGCTTGCATCACGGACGACGACAAGCTGTATCTGTGCGTGTCGTCG
CCGACCATCCGCGACAAGCCGGTCCAGATCCGACCGTGGCGGCTCGCGGATGCGGACTTC
GTGTTGGACGCTAGCATGCCGCTAGATCCGCGCAAGACTGTGTTCGTGGGCGGCGTGCCG
AGACCCTTGAAGGCTGTTGAGCTCGCCATGATTATGGACCGGCTGTATGGCGGGGTGTGC
TATGCTGGGATCGACACGGACCCCGAGCTCAAGTACCCCAAGGGTGCAGGTCGCGTGGCG
TTTTCCAACCAGCAGTCTTACATAGCAGCCATCTCGGCCCGCTTCGTTCAGCTCCAGCAC
GGAGACATTGACAAGAGAGTGGAGCCGTACGTGTTGGACGATCAGATGTGTGACGAGTGC
GCGGGGGCGCGGTGCGGCTCTAAGTTTGCTCCGTTCTTTTGCGCCAACGTGACATGCCTC
CAGTATTACTGCGAGCACTGCTGGGCGACCATACACTCTCGCCCCGGGCGGGAGTTCCAC
AAGCCGCTGGTGAAGGAGGGCGCCGACCGACCCAGGGCCGTGCCGTTCCGCTGGTGTTAG
Protein sequence:
MMHFFQSIELSHNEIGREACMQLVEALTIQPGAKDRLTRVNLAGNSLGGAANKKIMKDKL
GASAELSDGEGSDEECKSPFFPGVEEAGVASAAAGSPSGPADQAQDVVSRLSAAGLSMCV
SALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAES
KSYFPPKGYAFLLFQDESSVAALMEACITDDDKLYLCVSSPTIRDKPVQIRPWRLADADF
VLDASMPLDPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVA
FSNQQSYIAAISARFVQLQHGDIDKRVEPYVLDDQMCDECAGARCGSKFAPFFCANVTCL
QYYCEHCWATIHSRPGREFHKPLVKEGADRPRAVPFRWC