| New model in OGS2.0 | DPOGS200382 |
|---|---|
| Genomic Position | scaffold339:+ 43309-45843 |
| See gene structure | |
| CDS Length | 2379 |
| Paired RNAseq reads | 673 |
| Single RNAseq reads | 1551 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007239 (2e-92) |
| Best Drosophila hit | CG1671 (9e-125) |
| Best Human hit | transducin beta-like protein 3 (3e-161) |
| Best NR hit (blastp) | PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] (0.0) |
| GeneOntology terms | GO:0032040 small-subunit processome GO:0006364 rRNA processing |
| InterPro families | IPR011046 WD40 repeat-like-containing domain IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR001680 WD40 repeat IPR019781 WD40 repeat, subgroup IPR013934 Small-subunit processome, Utp13 IPR019775 WD40 repeat, conserved site IPR020472 G-protein beta WD-40 repeat IPR015943 WD40/YVTN repeat-like-containing domain |
| Orthology group | MCL12617 |
Nucleotide sequence:
ATGGCAAATCTTAAAGAATTGTATGAGAAGACAGCAGAATTAAAAGCATTTTACACAGGA
GGACATATTCAATGGACCAATGATGGTGAACATTTTCTCTGCCAATGTGATGATGTTATT
AAAGTTATTGATGTCAACACACTCAGTAATCCATTGACTATTGGAGATGCTACTGAGGAT
AAAGATGACAGTGACGTCATTTACACCTTCCAAATGTCGAAGGATAATGAGACTGTAGTT
ACAGCACATAAAAGTGGATTAATTAAAATATGGGATAGAAAAGAAGGGAGCCAGCTAAAA
ATGTGGAGATCTGGACATAAAGGTGCCATTGCAAAGTTAGCCTTTGATGCAAATGGAACA
AATGTTGCTTCAGGCAGCACGGACGGAAATATAAAATTATGGGACATCACTCATAACACT
TGTACGAGCAGCTTGAGGGGAGCTCTGGGAGTGTTTTCACTTGTCAAGTATCATTCGGAT
GATTCAAAACAGCTAATATTTGGTGCTGCAGATGACACTAAGATAAGATCCTGGAATTCT
AAATCTGGTAAAGAGAGTGTTATATATTCAGGACATTTTAGTAAGGTCACAAGCTTAGAA
TTTACACCAGATGGTGACCATATGGTGAGTTCGGGAAGAGACAGAGTTCTTATACTGTGG
AAACTTGGTGAAGGCAAAGCACTCAAAGTTCTACCAGTGTATGAATGTATAGAAACACTT
GCACTTCTGCCACCAAGTTTCAAAATTCCCAACTTTACTAAGAAAGTTGGCACAGAAGGT
ATATATGTTGCTTGTGCTGGTGAGAAAGGTATTGTTAAGGTTTGGAATGTACAAATGAGT
CGTCTAATGTTTGAACAGACAAACAGTCTTGTATCACCAGCCAATGAAGACGGGGGTTTA
GCGGTCACCCATTTGTTATTCAATGAAGCAAGGAATATGTTCTCCGTAGTCACCGCTGAC
CATAACATTATTATACATGACTTAGAGTCTTTTGGCTGTGTTAAACAATTAATTGGTTTC
ACGGATGAAGTATTGGATATTATTTTTGTTGGTAAAGATGAGTCGCATATAGTTGTTGCT
ACAAACAGTAAAGATTTAAAGTATTATGAGCTAGGAAGCATGGACTGTAAATTATTAAAG
GGTCATACAGATATTGTTCTTGCGTTGTCATGTTTTCCAACAAGGCCGGATTTATTTGTG
TCCTCTGGTAAGGACAATACTGTCAGAATTTGGTTACAAATTGATTACAATGAAGTCAAG
TGTATTGGTGTTGGCACAAGACATACTGCATCAGTGGGTTCTGTTTTCGCTTCTCAAACA
TCAGCGAATTTCTTTGCCTCTGTAAGCCAGGATAGCTGTTTAAAAATTTGGACTATACCT
AAAGATTTTGACTCTACGGAAACAAAACTTAACTCAAGTCATACAGAATTAGCTCATAAT
ATGGATATTAACTGTGTCTCCATATCTCCAAATGATAAAATAATAGCAACCGGTTCACAA
GACAAAACGGCGAAGCTTTGGAGCGATGATTTATCATTGTTGGGTGTGCTGAAAGGGCAC
AGGAGAGGTATATGGTGCGTCAGGTTTTCTCCAGTCGATCAAGTAGTGCTGACGTCATCA
GCAGACGCTACATTGAAATTATGGTCCATAGCAGATCTTAGTTGTCTCAAGACATTCGAA
GGTCACGAAAGTTCAGTCTTGAAAGTAGATTTCCTTAGCAAAGGACAACAAATAATATCG
AGTGGAGCGGACGGTCTTTTAAAACTTTGGACAATAAAGACATCGGAATGCAAAATGTCT
TTAGATAATCACGAAGGTAAAGTGTGGTCCATGACAGTTAGCAAGAATGAATCGATCATA
ATAACAGGTGGCTCGGATTCTAAGCTAGTGACTTTGAAAGAGGTGTCCGTTGAGAGGCGA
GAAAAGTTAGCAAGAGAACGAGAGGAACTCATTCTACAAGAACAGGAGCTCATGAATTTA
TTGCACGACAAGAAATTAATAAAAGCCCTTAAATTAGCGTTGCGAATGGAGAGACCTAAG
AATGTTCTAAAAATAATCAACGAAATTTTAAAATCCGGTCATGAAAAACTCTCTGAGACC
CTCAAAGAAATTAATAACACACAGAAAGAAACTCTACTCAGATTCGCTGCCGAATGGAAC
ACTAATAATAAGAATGCTCACGCAGCGCAGTACGTATTTTACATCTTAACACCAGAAATA
ATATCTGGTAGCCTCAAGGTGTCGTCGTTAGGAAGTTTCATAGAAGGCGCGCTGCCGTAC
ACCGAGCGTCACTTTGAAAGATTAACGAACTTACTCCAGGACCTTAATTTCGTTACGTAC
ACTGTAAATTGTATGCAACCACATTCTGTTAAAAAATAA
Protein sequence:
MANLKELYEKTAELKAFYTGGHIQWTNDGEHFLCQCDDVIKVIDVNTLSNPLTIGDATED
KDDSDVIYTFQMSKDNETVVTAHKSGLIKIWDRKEGSQLKMWRSGHKGAIAKLAFDANGT
NVASGSTDGNIKLWDITHNTCTSSLRGALGVFSLVKYHSDDSKQLIFGAADDTKIRSWNS
KSGKESVIYSGHFSKVTSLEFTPDGDHMVSSGRDRVLILWKLGEGKALKVLPVYECIETL
ALLPPSFKIPNFTKKVGTEGIYVACAGEKGIVKVWNVQMSRLMFEQTNSLVSPANEDGGL
AVTHLLFNEARNMFSVVTADHNIIIHDLESFGCVKQLIGFTDEVLDIIFVGKDESHIVVA
TNSKDLKYYELGSMDCKLLKGHTDIVLALSCFPTRPDLFVSSGKDNTVRIWLQIDYNEVK
CIGVGTRHTASVGSVFASQTSANFFASVSQDSCLKIWTIPKDFDSTETKLNSSHTELAHN
MDINCVSISPNDKIIATGSQDKTAKLWSDDLSLLGVLKGHRRGIWCVRFSPVDQVVLTSS
ADATLKLWSIADLSCLKTFEGHESSVLKVDFLSKGQQIISSGADGLLKLWTIKTSECKMS
LDNHEGKVWSMTVSKNESIIITGGSDSKLVTLKEVSVERREKLAREREELILQEQELMNL
LHDKKLIKALKLALRMERPKNVLKIINEILKSGHEKLSETLKEINNTQKETLLRFAAEWN
TNNKNAHAAQYVFYILTPEIISGSLKVSSLGSFIEGALPYTERHFERLTNLLQDLNFVTY
TVNCMQPHSVKK