| Genomic Position | scaffold430:- 231642-240171 |
|---|---|
| See gene structure | |
| CDS Length | 2769 |
| Paired RNAseq reads | 1682 |
| Single RNAseq reads | 4679 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012709 (9e-38) |
| Best Drosophila hit | akirin, isoform B (6e-19) |
| Best Human hit | akirin-1 isoform 1 (6e-08) |
| Best NR hit (blastp) | polyprotein [Tetraodon nigroviridis] (7e-69) |
| Best NR hit (blastx) | polyprotein [Tetraodon nigroviridis] (3e-63) |
| GeneOntology terms | GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication GO:0005622 intracellular GO:0008270 zinc ion binding GO:0003723 RNA binding |
| InterPro families | IPR007087 Zinc finger, C2H2-type IPR000477 Reverse transcriptase |
| Orthology group | MCL10002 |
Nucleotide sequence:
ATGGCGTGTGCTACTCTCAAAAGAAATTTGGATTCCACAATGTCCATGGCGCAAATGCCG
GCAAAGCGGCGAAGATGTGCTCAATTTGCCGCAAGCTCAAGCACAAGTCCCGGAATAAAA
ATGTCTCAAACTTCTGGAAGTTCTGTTTTTGGAGAAACCGTTAGTGCATCTGCAAAATAT
ACCCCAGAGCGTATGGCACAGGAGCTGTGTGACGAAATAATGCGGCTTCGTCGTCGGCGT
CAGCTGCGCCTGGCGTCCGGAGCGGCCGCGTCGTGCTCGAGTTCCAGTGGCAGCGAGGGC
GACTGCAGCCCGCCCAGGGCACACTCCACCAAGAAGGTCCACCATCGCGCGCTATTCACA
TTCAAACAGGTCCGTGCGATCTGCGAACGTATGCTCCGTGAGCAGGAGGCAGCTCTCCGT
GCTGAGTACACCTCCGTCTTGCACACCAAGCTCGACGAACAATACGCATCATTCGTACGG
TTCAACATTGACCAGGTACAGCGCCGACCCCCCGCAAACACATGTATGCCACTCGGAATG
GATGCTGAACATCACATGCATCAAGACCTTGTACCCAGCTTCCGAGAGGGGGGGCGAAAG
ATCTGTCCACCGGTCGATGTAAACGGCGAAAACGGCGCGAATACGGATTTGAAATGCCCT
ACGTGCGGGAAAAATTACAAGAGACGAGCCTGGTACATTAAACATCTAAAAACACATAAT
GGTGTTGAAGCACGACAATCGTCGGTAAGTTCTTCAACTTTCACTGCGGATAGAGTTGAC
CCTCATGTATCCCATGGTGAACCATTAACTGGAAACTACCAGGAGTCCATTGACATCCGG
ACACGTCTTAGCATTCCAAACATGAAACAATCGACTTGGAAAGTTCACGACGACAATTTA
GCGGACCTGTTAGAGCATCCGGGCTCGAAGCAGGATTTGAACTCGCGAGTAGAAACTTTC
CAAAATACTATTTACGACTACTTTAACGAGCAATATCCACCTCGAAATCATTACGCTCGC
AAAAATAAAGACAATTCTTTCAAGATAAAAATGAGGAGGAAAAAACGGGAATTAATAAAA
AATCTACGTATAGCCAAAGCCCTAGGCGACAATCACCTTAGTCATCAACTAGCTAGGGCG
TTAAGATCGATTCTAAAATTAATTCAAGGAATATCGGCGCAAACCGCAGAAAATCGCGAT
AATTTTGACCGGGCAAAACAGGAAGTAGATTTTGATAAAAACCCTTTTGAGTATTCGAAA
ACCATTTTTAAGAAAGAACGCGGACAGCTTCTCTTGACCAATGAACAAATTTACGATCAT
TTTAAGAGCACATACGAAGTGCCTAAAAGTGTAAGACTCTATGCGGATCCCAACGAACAA
AAACCTGGAATTCCTCGTTTCGATTTCCACGGCATTCCACCAACGCTAGATGAGATAAGT
ATTCAGATAAAGAAAAAATCGTCTAAATCTGCGCCGGGACCCGATGGTATCCCATATATA
GTCTTTAAAAAATGTCCATCGGTTCGTAAACATCTCACATATATATACGATAAAATCTGG
TCAAGGAAGCAAATCCCGGAGTGCTTCGGGAAAGCAATTTTTGTCCTCATTCCCAAAAAA
GATCGAGTCACAGATCCGAAAGATACTAGACCGATAGCCTTAACAAATACTATATCCAAA
ATCTTTTTCTCAGTTCTACAAACGAGAATGACGCGATTCATGCTCAGCAACAGGTATTTT
AGGCCAAATCACCAGAAAGGGTTTTTACCCGGAATTTCTGGATGCCTAGAACACAACACT
TTGCTGTCGGAGAGTTTAAAAGATGCTAGGAAAAGCGAGAGGCAAATTACAGTTTGTTGG
ATAGACTTAGAGAACGCGTTCGGGTCGATACAACACGAATTGATGCTATTCGCGCTGAGA
TGGTACAACTTTCCGCCCCTAGTTACCGATATGATCGCGTCGTACTACTCAAAATTAAAG
TTTTCTATAACAACTAAAGAAGGCCATTCAAAAACTTTTAGTTACAATGTAGGACTATTT
CAAGGTTGCTGTTTGTCTCCAATTGTATTTAATATTGTAATTAACATCTTAGTAGATAAA
TTAACCAGCAACGAGAAAAAATGGGGGTATCGGTTCAAGTTTAATAATAAATACACGGAA
TCCATTTTAGCCTTCGCTGACGATCTCGCAATACTGACACGTAACCCCAAACACTGTCAA
GTACTATTAGATGAAGTGGATAGATTCTGTGAGTGGACCGATGGATTGAGGACAAAACCA
AGTAAATGTCACTGTCTGTGTCTCGGTAGGCGGAGTACAAGATACACCTCATACGATCCG
GGATTATCGTTAGGCGGTCAATGCATTTCTACGGTTACAGAAAATGCACCATTTAAATTT
CTCGGTCGGAAGATTGATAATATAGGTCGTACTCCATCTTTAGAAGGTATAGTAGATAGC
TTTTTAAACGATCTCAACAAGGTAGATAGCCAACAGATCAGTAACGTTAAAAAAGCTTGG
ATCTACGATAATTATCTGACTTCACGTTTAAATTGGCCTTTCCTTGTCTATGATTTTAAT
AAAACCCTTTTGTCAAAGTTAGATGCAGGCTTCATAAAGATGTTGAAGTTGTGGCTCGGG
CTCGCGCCAACGGCTGATTCATCGGCTTCATTTAGGGATCGCAATAGTTTTGGGATGAGT
CTAAAAAGGCCATCGGAGCTCTATAAACACCTGAGTTTCCAAGAGATACATCCTGGGGAA
ATCCCATGA
Protein sequence:
MACATLKRNLDSTMSMAQMPAKRRRCAQFAASSSTSPGIKMSQTSGSSVFGETVSASAKY
TPERMAQELCDEIMRLRRRRQLRLASGAAASCSSSSGSEGDCSPPRAHSTKKVHHRALFT
FKQVRAICERMLREQEAALRAEYTSVLHTKLDEQYASFVRFNIDQVQRRPPANTCMPLGM
DAEHHMHQDLVPSFREGGRKICPPVDVNGENGANTDLKCPTCGKNYKRRAWYIKHLKTHN
GVEARQSSVSSSTFTADRVDPHVSHGEPLTGNYQESIDIRTRLSIPNMKQSTWKVHDDNL
ADLLEHPGSKQDLNSRVETFQNTIYDYFNEQYPPRNHYARKNKDNSFKIKMRRKKRELIK
NLRIAKALGDNHLSHQLARALRSILKLIQGISAQTAENRDNFDRAKQEVDFDKNPFEYSK
TIFKKERGQLLLTNEQIYDHFKSTYEVPKSVRLYADPNEQKPGIPRFDFHGIPPTLDEIS
IQIKKKSSKSAPGPDGIPYIVFKKCPSVRKHLTYIYDKIWSRKQIPECFGKAIFVLIPKK
DRVTDPKDTRPIALTNTISKIFFSVLQTRMTRFMLSNRYFRPNHQKGFLPGISGCLEHNT
LLSESLKDARKSERQITVCWIDLENAFGSIQHELMLFALRWYNFPPLVTDMIASYYSKLK
FSITTKEGHSKTFSYNVGLFQGCCLSPIVFNIVINILVDKLTSNEKKWGYRFKFNNKYTE
SILAFADDLAILTRNPKHCQVLLDEVDRFCEWTDGLRTKPSKCHCLCLGRRSTRYTSYDP
GLSLGGQCISTVTENAPFKFLGRKIDNIGRTPSLEGIVDSFLNDLNKVDSQQISNVKKAW
IYDNYLTSRLNWPFLVYDFNKTLLSKLDAGFIKMLKLWLGLAPTADSSASFRDRNSFGMS
LKRPSELYKHLSFQEIHPGEIP