| New model in OGS2.0 | DPOGS209006 |
|---|---|
| Genomic Position | scaffold831:+ 10805-15978 |
| See gene structure | |
| CDS Length | 1404 |
| Paired RNAseq reads | 1148 |
| Single RNAseq reads | 3513 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012547 (0.0) |
| Best Drosophila hit | Nonsense-mediated mRNA 3 (1e-162) |
| Best Human hit | 60S ribosomal export protein NMD3 (8e-139) |
| Best NR hit (blastp) | nonsense-mediated mRNA 3 [Nasonia vitripennis] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to nonsense-mediated mrna decay protein [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0005515 protein binding GO:0000055 ribosomal large subunit export from nucleus GO:0003729 mRNA binding |
| InterPro families | IPR007064 NMD3 |
| Orthology group | MCL13670 |
Nucleotide sequence:
ATGTGCGTCGCTTGTCTGAGAGCCCACGTCGACATCACGGACGGAATTCCGAAGCAAGCT
ACATTATTTTTTTGCAGGGGATGTGAAAGGTACCTTCAACCACCTGCAGAATGGGTTACG
TGTGCTCTGGAATCACGAGAATTGTTAGCTCTATGTCTTAAGAGACTGAAGGGTCTGAAC
AGAGTGAAACTTGCTGATGCAGGCTTTGCTTGGACTGAGCCACATTCAAAGAGGATAAAG
GTTAAACTGACAGTGCAAGGGGAAGTAATGGGTGGAACTGTGCTTCAGCAGACATTCATA
GTGGAATATGTCATCCAACATCAGATGTGTGATGCTTGTCATCGTTCTGAGGCCCAAGAC
TATTGGCGTGCTTTGGTACAAGTCCGACAAAGAGCCAGCAATAGAAAAACGTTTTATTAC
TTGGAACAGTTAATACTTAAACACAAAGCTCACTCTAATACTTTGGGTATCAAGCCAAAA
CATGACGGCTTGGATTTCTTCTATGCTACAGAGAATTATGCTCGTAAAATGGTGGATTTC
ATACAATCAGTCCTACCTATAAAGTGTCAGCATTCAAAGAAACTTATATCTCATGATATA
CATAGTAATGTTTATAATTATAAATTCACATTCAGCATTGAAATTGTTCCCGTGTCGAAG
GATAGCATTGTATGCTTACCAAAGAAGTTGACACAAAGTCTGGGTTCAATATCACCGATA
TGTTTAGTGCAAAGAGTTACAAGCACCATACATTTGATTGATGCTTACACAGGACAAGTG
TGTGATCTTTCATCAACAATGTATTGGAGGTACCCATTCAATGCAATCTGTAATCCGAAG
CAACTTGTTGAATACATTGTGATGGATATTGATATATTAAAGGAACATGAAAAGAAAACA
TTCCCAGGTCAAGGCATGGTATCAAATAAACATGTTGTGGCCGATGTTTGGGTTGTGAAA
GCAAGTGAGCTTGGACTAGATGTAAATCCTATACACACAAGAACACATCTGGGTCATATA
CTTAAGCCTGGAGATGCAGTTTTGGGCTACAACCTCGGCGAATCTAATGTGAATGATGAC
AATCTAGACAAGCTGGACCGTGATATAATACCAGACGTGTATCTCGTTAAGAAACATTAC
GGCGAAAGAGCCGCGAGAAGACGTGCCAGAGCCTGGAAACTTAAACACATGCATGAACAT
GGATCGACCACAGATGACGACTACAACGAGTTCTTGGACGATCTGGAGGAAGATCCAGCT
CTGCGTCAGAATATAAACATCTTCAAGGATAGTAATAAAATACCAGTCGACACAGACGAG
ATAGATCCGTCCTTACCGAGGATCACTTTGGCCGAGATGTTGGACGACCTGGCCATAGAA
GACGTTGATATGACTGAAGTTTGA
Protein sequence:
MCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPAEWVTCALESRELLALCLKRLKGLN
RVKLADAGFAWTEPHSKRIKVKLTVQGEVMGGTVLQQTFIVEYVIQHQMCDACHRSEAQD
YWRALVQVRQRASNRKTFYYLEQLILKHKAHSNTLGIKPKHDGLDFFYATENYARKMVDF
IQSVLPIKCQHSKKLISHDIHSNVYNYKFTFSIEIVPVSKDSIVCLPKKLTQSLGSISPI
CLVQRVTSTIHLIDAYTGQVCDLSSTMYWRYPFNAICNPKQLVEYIVMDIDILKEHEKKT
FPGQGMVSNKHVVADVWVVKASELGLDVNPIHTRTHLGHILKPGDAVLGYNLGESNVNDD
NLDKLDRDIIPDVYLVKKHYGERAARRRARAWKLKHMHEHGSTTDDDYNEFLDDLEEDPA
LRQNINIFKDSNKIPVDTDEIDPSLPRITLAEMLDDLAIEDVDMTEV