| New model in OGS2.0 | DPOGS210855 |
|---|---|
| Genomic Position | scaffold550:- 4124-9834 |
| See gene structure | |
| CDS Length | 1809 |
| Paired RNAseq reads | 33 |
| Single RNAseq reads | 103 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006982 (3e-117) |
| Best Drosophila hit | CG17838, isoform C (2e-25) |
| Best Human hit | probable RNA-binding protein 46 (1e-33) |
| Best NR hit (blastp) | PREDICTED: similar to RIKEN cDNA 1810073H04 gene [Strongylocentrotus purpuratus] (5e-46) |
| Best NR hit (blastx) | PREDICTED: probable RNA-binding protein 46-like isoform 1 [Pongo abelii] (1e-34) |
| GeneOntology terms | GO:0000166 nucleotide binding GO:0003676 nucleic acid binding |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL19019 |
Nucleotide sequence:
ATGTCAACATGTCAACTGAAAAATGACATTCGTCTGACAGTAGATAAGAGTACAAGAGCT
GGTGAAAGACAAACAAAATCCTTAGAAGAATTGGAACTAGATTTCGAAGATGAAAAGAAT
TCAATGTTAGCTACACCAGTATTCGAAGAAACGACTTATGAAGATTTTTATGACGAAATT
GATAACAGAATTGAATTAGATGATTCCATGAATATGATATTTTTTGGTCCTCCTAGTTCT
TTCTTAAGACTTGATGCAGAATCTATTTTACACATACTGACAAATACCAAGAAAGACTTG
ATACCGATTTCTCGGACATTGTTAGCTTGGGATGTAGTGACAGATGGAAAAACTTCTGCT
TTTTTACAAGGTCGGGAGTTTCTTGCCTTTGGAAGCCTTTTAAACGATATACCCGAAGAA
GATTTATATTATGTAAATTTTGGAGATCCATCTGTTTATAAATATTTCGCGAAAAATTAT
GTCAATTTAAATAATAGAAAGTTCGGAGTTTTGGCTGCAGCGTATAGACGATATTATGGC
AACAACTGGTATAAAAACGGTTTCCTTGTGAACGATCTCGGATACATGTTGTGTGGATTT
CCGTCACACGATTTGAAACGCATAACGCCATCTACTTTTAAGGAGCTTACATTTGACGTT
CTCAGTAAACTTGGTAGATGTAGTACTCATCAAAAGCTGACTTTATATAATATAGCCACA
CATCCTGATGCTTACGGAGAGCCGCACAAATGGTCTTCGCATGAAGTTGGCAGGCTAAAT
TCTTTATTTAATTGTATACCAAGAGAGGAAATAAGTTCAATTCAATTAGAAGCTATAGCA
GCTATTAGTCCAAATGTAATGAAACTTATAAAACAAGAAAAGCTATCATTATTATCATTA
ACCGAAAACAATACTTCTTATACCCTTACACAAATAAATGGCCAAAGGATTTACAGAAAA
GCACCCCATGCTTGGAGTGGTCCGGAACCATCAAGGAATTGCGAGGTATTCATTGGTCGC
ATACCACACGATTGCTTCGAGGACACTTTGGTGCCTCTGTTCCGCCAAGCGGGGGAACTG
TTCGAGTTTCGTCTCATGATTAATTTTTCCGGTTGGAACAGAGGATATGCATTTGCTATG
TATACCACCGAAGAAGAGGCGAGCAACTCCATACGAATGTTCAACAATTATATGATCCGA
CCCTCCTGGCAACTCGGTGTCTGCCCATCGATCAACAACTGCCGCATCTTCATATCTCGT
ATCCCGGCCACGACGCCGACGTCCGAGATAGTACGGTTGGTGTACGCTCTGACGGAGGAG
GTGCAGGAGGTGCGCGTGCGGCGCTCGGCGGCGGCCTGCGCGGCCATCGTGGAGTACCGC
TCGCACCGCGGGGCGGCCATGGCGAGGAAGGCGCTGGTGGCGGCGGCCGCGGCGGCCTGG
GTGGGTCGCTGGAGCCCAGAGCGTGGCGTGGAGCTGACTAGGGCAGGTGACGATCCTCCG
GCGGCGGGCATGGTGTCAGCGGGCGGCGCGGGCGGCGGCTCCTACACGCTGGAGCGCTGG
TCGCAGGCTCGACGGCTAAGGATGATACACGAGGCTCAGCGCAACGCACACGCCGCCGCC
GCCACTCAGGCCGCACCCTTACCAACCGCTCACGATTGGTCCCCCCAGGGCATAGATTCT
CTGGTGTCGTCTCTGTCTTCACTGGGTGTGTCTCGAGTGTGGGCGGCGCCGCCCCCGCCC
ACTCGTGACTTCAACCCCTGGACCGCTCGTCACCCGCTGGAGGAGTTCATACCGCACCGC
TCACAGTGA
Protein sequence:
MSTCQLKNDIRLTVDKSTRAGERQTKSLEELELDFEDEKNSMLATPVFEETTYEDFYDEI
DNRIELDDSMNMIFFGPPSSFLRLDAESILHILTNTKKDLIPISRTLLAWDVVTDGKTSA
FLQGREFLAFGSLLNDIPEEDLYYVNFGDPSVYKYFAKNYVNLNNRKFGVLAAAYRRYYG
NNWYKNGFLVNDLGYMLCGFPSHDLKRITPSTFKELTFDVLSKLGRCSTHQKLTLYNIAT
HPDAYGEPHKWSSHEVGRLNSLFNCIPREEISSIQLEAIAAISPNVMKLIKQEKLSLLSL
TENNTSYTLTQINGQRIYRKAPHAWSGPEPSRNCEVFIGRIPHDCFEDTLVPLFRQAGEL
FEFRLMINFSGWNRGYAFAMYTTEEEASNSIRMFNNYMIRPSWQLGVCPSINNCRIFISR
IPATTPTSEIVRLVYALTEEVQEVRVRRSAAACAAIVEYRSHRGAAMARKALVAAAAAAW
VGRWSPERGVELTRAGDDPPAAGMVSAGGAGGGSYTLERWSQARRLRMIHEAQRNAHAAA
ATQAAPLPTAHDWSPQGIDSLVSSLSSLGVSRVWAAPPPPTRDFNPWTARHPLEEFIPHR
SQ