| New model in OGS2.0 | DPOGS210816 |
|---|---|
| Genomic Position | scaffold550:+ 17857-20210 |
| See gene structure | |
| CDS Length | 1290 |
| Paired RNAseq reads | 116 |
| Single RNAseq reads | 337 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007132 (4e-105) |
| Best Drosophila hit | CG9272 (2e-76) |
| Best Human hit | endonuclease III-like protein 1 (6e-81) |
| Best NR hit (blastp) | predicted protein [Nematostella vectensis] (7e-89) |
| Best NR hit (blastx) | predicted protein [Nematostella vectensis] (4e-87) |
| GeneOntology terms | GO:0003677 DNA binding GO:0005515 protein binding GO:0003690 double-stranded DNA binding GO:0006285 base-excision repair, AP site formation GO:0003906 DNA-(apurinic or apyrimidinic site) lyase activity GO:0003824 catalytic activity GO:0004519 endonuclease activity GO:0005739 mitochondrion GO:0006296 nucleotide-excision repair, DNA incision, 5'-to lesion GO:0005634 nucleus GO:0019104 DNA N-glycosylase activity GO:0051539 4 iron, 4 sulfur cluster binding |
| InterPro families | IPR003265 HhH-GPD domain IPR000445 Helix-hairpin-helix motif IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif IPR011257 DNA glycosylase IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal |
| Orthology group | MCL14946 |
Nucleotide sequence:
ATGCCTCCAAAAAAAGGAAAACAACTTGCTTCAACGAGTGTTGCAGTAGCAAAAGCTTTA
AAGAAGAATGAATTACACAGTATTATTAATAAGCCTGAACCATCTTCGACGGATATTATG
CTTGATTTAAACAAATTTAAATTTGAAAAGAAGCCACCTGTAAAAATTGAATTTGATAAG
GAGTCTCCCACTAAACAGGATCAAGAAGTTTTGTGGGAACCACCGAAATGGCGAGAATTT
TTGATAAATTTGAGAAATATGAGAGCAAACAACGATGCTCCTGTGGATTCAATGGGTTGT
CACATGTCCATGGATGAAGATGCTCCTCCAAAAGTAATGAGGTATCAAAGTCTAATTTCC
CTCATGCTGTCCAGTCAAACCAAGGATCAAGTTACATTTGCAGCCATGGAAAGACTAAGA
GCTAAAGGACTGACGGTGGACAACATCTTGGATATGAGTGATGAGGAATTAGGTCAACTT
ATTTATCCAGTAGGGTTTTGGAAGACTAAAGTAAAATACATAAAGAAGACAACACAAACA
TTGAAAGATCAGTACGATGGAGACATACCAGACTCGGTGGATAAACTCTGCAAGCTTACC
GGAGTTGGACCTAAAATGGCACATATTTGTATGAAAGTTGCTTGGAATAAAGTGACTGGC
ATTGGTGTTGACACCCACGTCCATAGAATAAGCAACAGAATAGGATGGGTTAAAAAATCT
ACATCTACACCAGAAGATACTCGAAAAGCATTACAATCATGGCTGCCATTTGAGCTTTGG
AGTGAAGTCAATCATTTAATGGTAGGATTCGGTCAGACGATCTGTTTACCCATCGGACCC
AACTGTCAGGAATGTTTAAATAATGATATTTGTCCTTCAAGCGAGAAGGATAAGAAGTCT
CCATATAAGAGGTCACCAAAGAAATCACCAGCAAAGATTATTAAAAGTGAACCAATGGAA
ATGGGTTTGGATAAAATCAACAATCATGAGGTTAAAGAGCTAACCCACACAAGTTTACAA
GATGGAAATGCTGATATTCTTAAAGTGAAAGGTTTAATTTCATCCAAACTAGAAAATGAA
ACGGTTGTAAAAACTACAAAATCACCCAAACAAGAAGTTCAAACATGCAATTTGTTAGAA
AACATAGAGTGTCCTGACATCGTGATAACTAATGACAGGAGTTCTAAGAAAATCCCTTCA
GAAATAAAAAAACGAAAGTCACCCAGAGTACTAAAACAGAGTTTGGCCGCTAGCGATACA
AAGATAAAAAAGATAAAACAAAAGAAATGA
Protein sequence:
MPPKKGKQLASTSVAVAKALKKNELHSIINKPEPSSTDIMLDLNKFKFEKKPPVKIEFDK
ESPTKQDQEVLWEPPKWREFLINLRNMRANNDAPVDSMGCHMSMDEDAPPKVMRYQSLIS
LMLSSQTKDQVTFAAMERLRAKGLTVDNILDMSDEELGQLIYPVGFWKTKVKYIKKTTQT
LKDQYDGDIPDSVDKLCKLTGVGPKMAHICMKVAWNKVTGIGVDTHVHRISNRIGWVKKS
TSTPEDTRKALQSWLPFELWSEVNHLMVGFGQTICLPIGPNCQECLNNDICPSSEKDKKS
PYKRSPKKSPAKIIKSEPMEMGLDKINNHEVKELTHTSLQDGNADILKVKGLISSKLENE
TVVKTTKSPKQEVQTCNLLENIECPDIVITNDRSSKKIPSEIKKRKSPRVLKQSLAASDT
KIKKIKQKK