| New model in OGS2.0 | DPOGS202104 |
|---|---|
| Genomic Position | scaffold495:- 134066-146483 |
| See gene structure | |
| CDS Length | 1488 |
| Paired RNAseq reads | 520 |
| Single RNAseq reads | 1524 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006896 (5e-132) |
| Best Drosophila hit | CG6876 (7e-163) |
| Best Human hit | U4/U6 small nuclear ribonucleoprotein Prp31 (7e-133) |
| Best NR hit (blastp) | PREDICTED: similar to AGAP012142-PA [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to CG6876-PA isoform 1 [Apis mellifera] (6e-171) |
| GeneOntology terms | GO:0005681 spliceosomal complex GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR019175 Prp31 C-terminal IPR002687 Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain IPR012976 NOSIC |
| Orthology group | MCL13257 |
Nucleotide sequence:
ATGTCTCTTGCTGATGAGCTATTGGCTGACTTAGAAGAAAATGATGACGGAGAGCTTGAA
GCTATAATTGAGAATAAAACTGCAGATTCTCACGAGTTTGCTGTACCCTTTCCTGTGATA
CCTAAAGAAGAAGAAATAAAAAATGTATCAATTCGAGAATTGGCTAAATTAAGAGATTCA
GATCGGCTTAAACGGGTTGTAGCAGAAGTAGAGCAAAATGCGGGTAATAAAAGAAAGAAA
ATTGAGGTTGTTGGTTTAATGGAATCTGATCCTGAATATCAATTAATAGTTGAAGCTAAT
AATATAGCAGTTGAAATTGATGGTGAAATTGCTACTATTCACAGGTTTGTTCGGGATAAA
TATCAGAAAAGGTTTCCAGAGCTGGAGTCATTGATTGTAACACCATTAGAATATATCCGT
ACTGTAAAGGAGTTAGGAAATGACCTTGACAAAGCTAAGAATAATGAGATTCTTCAAAGT
TTTCTCACTCAGGCAACTATTATGATAGTGTCCGTCACTGCTTCCACAACACAAGGAAAA
TTATTGTCAGATCATGAACTGAGTGAAATCTTTGAAGCATGTGATATGGCTGCAGAGTTG
AATAATTTTAAATCAAATATCTACGAGTACGTTGAGAGCAGGATGACTTTCATAGCTCCA
AACATAACAGCTATTGTTGGTGCATCAACAGCAGCGAAAATTCTTGGAGTGGCAGGTGGT
CTATCCAAGCTGTCCAAAATGCCAGCATGCAATGTTCTGCCACTTGGACAGCAAAAGAAG
ACGCTGTCTGGCTTCTCCCAAGCCGCTTCACTACCTCATACTGGCTTTATATACTTTTCT
CAAATAGTACAAGATACAACTCCTGAATTGAGATACAAAGCAGCTAAGCTTGTATCAACA
AAATTAACTCTGGCGGCTAGAGTTGATGCTTGCCATGAAAGTACAGATGGTGCCATTGGT
CGGTCATTGAGGGAAGGAATAGAGAAGAAATTAGACAAATTACAGGAACCGCCTCCAGTG
AAGTTCGTGAAGCCGCTTCCAAAGCCGATTGAACAGAGTAGGAAGAAACGTGGCGGGAAA
CGTGTGAGGAAGATGAAGGAGCGATACGCCATGACGGAGTTCAGGAAGAACGCCAACAGA
CTCAACTTCGCTGACATCGAAGACGACGCTTATCAAGAAGACCTGGGGTACACTCGTGGT
ACGATCGGGAAATCTAGAACGGGTCGCGTCCGCCTGCCTCAAATAGACGAGAAGACCAAA
GTTCGCATCAGCAAAACCTTGCAAAAGAACCTGCAAAAACAAAACCAGCAGTACGGCGGG
GCTACGAGTATAAGAAGACAAGTGTCAGGAACGGCCTCCTCGGTGGCCTTCACGCCTTTG
CAGGGTCTCGAGATAGTGAATCCTCAGGCCGCTGAGACGAGAGTGAATGAAGCGAACGCG
AAATACTTTTCAAATACCTCTGGATTCCTATCGGTTGGAAAGACTTAA
Protein sequence:
MSLADELLADLEENDDGELEAIIENKTADSHEFAVPFPVIPKEEEIKNVSIRELAKLRDS
DRLKRVVAEVEQNAGNKRKKIEVVGLMESDPEYQLIVEANNIAVEIDGEIATIHRFVRDK
YQKRFPELESLIVTPLEYIRTVKELGNDLDKAKNNEILQSFLTQATIMIVSVTASTTQGK
LLSDHELSEIFEACDMAAELNNFKSNIYEYVESRMTFIAPNITAIVGASTAAKILGVAGG
LSKLSKMPACNVLPLGQQKKTLSGFSQAASLPHTGFIYFSQIVQDTTPELRYKAAKLVST
KLTLAARVDACHESTDGAIGRSLREGIEKKLDKLQEPPPVKFVKPLPKPIEQSRKKRGGK
RVRKMKERYAMTEFRKNANRLNFADIEDDAYQEDLGYTRGTIGKSRTGRVRLPQIDEKTK
VRISKTLQKNLQKQNQQYGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRVNEANA
KYFSNTSGFLSVGKT