| New model in OGS2.0 | DPOGS207725 |
|---|---|
| Genomic Position | scaffold674:+ 10507-18880 |
| See gene structure | |
| CDS Length | 2160 |
| Paired RNAseq reads | 2307 |
| Single RNAseq reads | 5294 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005288 (0.0) |
| Best Drosophila hit | structure specific recognition protein (0.0) |
| Best Human hit | FACT complex subunit SSRP1 (1e-161) |
| Best NR hit (blastp) | PREDICTED: similar to AGAP012335-PA [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to Single-strand recognition protein (SSRP) (Chorion-factor 5) [Apis mellifera] (0.0) |
| GeneOntology terms | GO:0000217 DNA secondary structure binding GO:0003697 single-stranded DNA binding GO:0005634 nucleus GO:0003727 single-stranded RNA binding GO:0005730 nucleolus GO:0001672 regulation of chromatin assembly or disassembly GO:0005515 protein binding GO:0035101 FACT complex GO:0043621 protein self-association GO:0031492 nucleosomal DNA binding GO:0051101 regulation of DNA binding |
| InterPro families | IPR000969 Structure-specific recognition protein IPR000910 High mobility group, HMG1/HMG2 IPR009071 High mobility group, superfamily |
| Orthology group | MCL14110 |
Nucleotide sequence:
ATGGAATTTTTAGAGTACAACGATGTTTCTGCGGAGATTAAAGGAGCTATGGTTCCAGGC
AGATTAAAAATGACAGATCAGAGTATAGTATTTAAAAACAGCAAAACTGGCAAAGTGGAA
CAGATATCATCAAACGATATAGAACTCGTTAACTTCCAAAAGTTCATTGGATCGTGGGGT
CTCAGAATATTCTTAAAAAATGGCACTCTACATAGGTACGGTGGATTTAAGGAAGGGGAA
CAAGAGAAAGTTGCCAAATTCTTCAAAAGCAACTATCACAAGGACATGTTAGAAAAGGAA
CTGTCTCTCAAAGGTTGGAACTGGGGTACGGCTAAGTTCAACGGAGCGGTCCTGAGTTTT
AATGTAGGCTCGAATACTGCCTTCGAAATACCCTTACACAATGTGTCACAATGTAATACC
GGCAAGAACGAGGTTACACTTGAATTCCATCAGAACGATGACACACCGGTGTCATTGATG
GAGATGCGTTTCCACATTCCCACGAGCGAGCTGGCGGGTGATATGGACGCGGTGGACGCC
TTCCATCAGCAGGTCATGAACAAGGCCAGTGTTATTTCCGTTTCCGGTGACGCCATTGCT
ATATTCAGGGAACTACAGTGTCTCACACCTCGCGGCCGCTACGACATCAAAGTGTTTCAA
ACGTTCTTCCAACTCCACGGTAAGACTTTCGATTACAAAATACCGATGTCGACCGTCCTG
CGTCTCTTCCTGCTGCCTCATAAGGACACGCGGCAAATGTTCTTCGTGGTGTCCCTCGAC
CCGCCCATCAAACAGGGACAAACCAGATACCACTATCTGGTGTTACTCTTCGGTATCGAG
GAGGAAACCAGCCTGGAACTGCCATTCACTGAGGAGGATCTGAAGGAGAAATACGAAGGG
AAGATCACTAAAGAGCTATCTGGTCCGACTTATGAAGTACTGGCAAAAATTATGAAAGTT
ATCATTAACAGACGAGTCACAGGTCCCGGAGATTTCTTGGGGCATCACAAGACCCCAGCG
ATCGCCTGCTCGTACAAGGCCGCGGCGGGCTACCTGTACCCGCTCGAGAAGGGTTTCATC
TACGTGCACAAGCCACCCGTGCATATACGGTTTGAAGAGATCGCATCCGTTAACTTCGCC
AGAGGAGGCGCTTCATCCACTAAATCGTTTGATTTCGAAATAGAATTGAAGTCGGGCAGC
GTTCACACATTCAGCAGCATCGAGAAAGGGGAATACGACAAGCTGTTTGACTATATCACC
TCCAAGAAACTGCACGTCAAGAACACGGGCAAGAATGACAAGGCGTTATACGACGACGAT
TTCGGCGACTCGGACACGGAGAAGGAGCCGGACGCGTACCTCGCGAGGGTGAAGGCGGAG
GCCGAGGAGCGAGACGTCGACGACTCCGACGAGAGCACCGACGAGGACTTCAACCCCGAC
AAGGCCAAAGAGAGCGACGTCGCCGAGGAGTACGACACCAACCCCTCGTCCTCCGAAGAC
TCGGACGCTTCCGGTGGTTCAGGAGACAGCAAAAAGGAAAAAAAGAAAGAAAAGAAACCA
AAGAAAACCATCACTATTTCAGAACAGCCGAGGAAACGTAAAGAGAAATCCAAGAAACGC
GAAAAGGACGTGAACGCGCCCAAGAGACCCTCCACGGCGTTCATGTTGTGGCTCAGCGAA
CACAGGAAAGGCATCATAGACGACAACCCCGGCATCAAAGTTACTGAGATAGCCAAGAAG
GGGGGAGAGCTGTGGAGGGATCTGAAGGATAAGACGCAATGGGAGGAGAAAGCAAACAAG
GCTAAAGAAGAATACAATCAAGCAATGAAGAAGTACAAAGACAGCGGAGCGGCTGACGAG
TTCAAACAGAAGAAGAAACAAGCGGAAAAAGACAAGAAAGCAGCTGATAAGAAGTCAAAG
GCACCGAGCAAACCCAAACAAAGCAAGAACACCAGCGCTGGCTCAGGCTCTGGCAAGTTC
ACCAGCAAGGAGTATGTAGAGGACGACGACAGCTCCTCTGACTCGGATAAGGAAAAGAAA
GATAAAAAAGATACAAAAGATAGTAAGGATACAAAGAAGAGCAAGGCCAAGTCTTCATCG
TCGGAAGCGGAATCGTCCGCCTCTGGCGATGAAAGCGGGAGCGGGAGCGGGAGCGATTAA
Protein sequence:
MEFLEYNDVSAEIKGAMVPGRLKMTDQSIVFKNSKTGKVEQISSNDIELVNFQKFIGSWG
LRIFLKNGTLHRYGGFKEGEQEKVAKFFKSNYHKDMLEKELSLKGWNWGTAKFNGAVLSF
NVGSNTAFEIPLHNVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIPTSELAGDMDAVDA
FHQQVMNKASVISVSGDAIAIFRELQCLTPRGRYDIKVFQTFFQLHGKTFDYKIPMSTVL
RLFLLPHKDTRQMFFVVSLDPPIKQGQTRYHYLVLLFGIEEETSLELPFTEEDLKEKYEG
KITKELSGPTYEVLAKIMKVIINRRVTGPGDFLGHHKTPAIACSYKAAAGYLYPLEKGFI
YVHKPPVHIRFEEIASVNFARGGASSTKSFDFEIELKSGSVHTFSSIEKGEYDKLFDYIT
SKKLHVKNTGKNDKALYDDDFGDSDTEKEPDAYLARVKAEAEERDVDDSDESTDEDFNPD
KAKESDVAEEYDTNPSSSEDSDASGGSGDSKKEKKKEKKPKKTITISEQPRKRKEKSKKR
EKDVNAPKRPSTAFMLWLSEHRKGIIDDNPGIKVTEIAKKGGELWRDLKDKTQWEEKANK
AKEEYNQAMKKYKDSGAADEFKQKKKQAEKDKKAADKKSKAPSKPKQSKNTSAGSGSGKF
TSKEYVEDDDSSSDSDKEKKDKKDTKDSKDTKKSKAKSSSSEAESSASGDESGSGSGSD