New model in OGS2.0 | DPOGS209060  |
---|---|
Genomic Position | scaffold17:+ 199369-200905 |
See gene structure | |
CDS Length | 855 |
Paired RNAseq reads   | 7 |
Single RNAseq reads   | 74 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA006116 (1e-64) |
Best Drosophila hit   | vismay, isoform B (3e-38) |
Best Human hit | homeobox protein TGIF2 (2e-28) |
Best NR hit (blastp)   | achintya [Bombyx mori] (1e-70) |
Best NR hit (blastx)   | achintya [Bombyx mori] (1e-63) |
GeneOntology terms    | GO:0003700 sequence-specific DNA binding transcription factor activity GO:0005634 nucleus GO:0003714 transcription corepressor activity GO:0042826 histone deacetylase binding GO:0007283 spermatogenesis GO:0045941 positive regulation of transcription GO:0016563 transcription activator activity GO:0043565 sequence-specific DNA binding GO:0006355 regulation of transcription, DNA-dependent |
InterPro families    | IPR012287 Homeodomain-related IPR001356 Homeobox IPR009057 Homeodomain-like IPR008422 Homeobox KN domain |
Orthology group | MCL24201 |
Nucleotide sequence:
ATGAAGATCAAATTACCAAGAGATCGTTTTCCCTCAACTTCTTCGACGGAAGACAACGAG
AGTGTCAACGATTGGGCGGATGTGCGGCCGGTGCTGCAGCCCCGCCTGCCGCCGCCGCAG
GCCATCATAGTGGGGTCTGTGAGGAAGCGACGCGGGAACCTGCCTAAGAACTCCGTCAGG
ATACTGAAGAGGTGGCTGTACGACCATCGATACAACGCCTACCCCAGCGACGCTGAGAAA
CTCGCCTTGAGCCAAGAGGCCAATCTCACCGTGCTACAGGTGTGCAATTGGTTCATAAAC
GCCCGCCGCCGCATTCTGCCGGAGATGATCCGTCGCGAGGGCCACGACCCTTTACAGTAC
ACAATATCTCGCCGCGGTCGCAAACAGCCGGGCCTGGGAGTGGGTCCCGTGGGGATGGTG
TCGGCCTCCACCTCCACCATGAGCGTGATGCCCGGGAACGTGACCGTCGCTGGATGGGAG
GGAGTCGAGGTTCAGAACATAGAACAGCCGCGCGGACACGACTACGGAGACGGTCTGCTG
GTGTACCGCGAGGGGGACGAGCTGGGGGACGGGGAGGAGGGGTACTCTAGTGCCGTCAGC
GAGGAGGAGGTGAAGTACGACCCATCGGTCTGGCAGTCCGTTATACGGTACGGACCAGAG
GAACAGGACCTACATCATATTAATAGAGGTTCGTCGGTGGTGAGCATGTCGACTGATGGT
ATGGAGCTGGTGGAGAGCGAGGGAGGGTGGCAGGCGCCGGCGCCGCTGGCCGCGAGGAGG
CAGGTGAGCTCTCCGCCGCCGCCCGTGGCCGTGGAGCTGGAGGTGGCCACCACGGACATG
TGGTGCCACACTTAG
Protein sequence:
MKIKLPRDRFPSTSSTEDNESVNDWADVRPVLQPRLPPPQAIIVGSVRKRRGNLPKNSVR
ILKRWLYDHRYNAYPSDAEKLALSQEANLTVLQVCNWFINARRRILPEMIRREGHDPLQY
TISRRGRKQPGLGVGPVGMVSASTSTMSVMPGNVTVAGWEGVEVQNIEQPRGHDYGDGLL
VYREGDELGDGEEGYSSAVSEEEVKYDPSVWQSVIRYGPEEQDLHHINRGSSVVSMSTDG
MELVESEGGWQAPAPLAARRQVSSPPPPVAVELEVATTDMWCHT