New model in OGS2.0 | DPOGS213639  |
---|---|
Genomic Position | scaffold543:- 123734-130960 |
See gene structure | |
CDS Length | 2664 |
Paired RNAseq reads   | 7185 |
Single RNAseq reads   | 22779 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA004581 (1e-101) |
Best Drosophila hit   | CG33521, isoform D (6e-33) |
Best Human hit | xin actin-binding repeat-containing protein 2 isoform 5 (9e-12) |
Best NR hit (blastp)   | PREDICTED: similar to CG33521 CG33521-PA [Acyrthosiphon pisum] (4e-72) |
Best NR hit (blastx)   | PREDICTED: similar to LIM domain protein [Nasonia vitripennis] (1e-89) |
GeneOntology terms   | GO:0008270 zinc ion binding |
InterPro families   | IPR001781 Zinc finger, LIM-type |
Orthology group | MCL17326 |
Nucleotide sequence:
ATGGCAACAACAATGGAGGCGTCTCAGTCTCTCATCCAGTCGGAGTCCAGAGTCAGTTAC
CAGGAGGTGCACGTCACGGAGAGGACCAAGAAGAAAAGCAAGACACGACGGCATAAGGAC
GAGGGATCTATATCAGTGTCCAAGAGCTCCGAGAAGCTGTTCAAGAAGATGAAGGCGGCA
GAGGGAGACAACCCGACCTGCGCCAAGTGCGCCCGGCCCGTGTACGCCATGGAGAGGGTG
AAGGCGGAGAGGCGCTCCTGGCACAGGGACTGCTTCAGATGTGTACAGTGTGACCGACAG
CTCACCGTGGAGTCCTACGAGAGCGACCACACCGCCCTGTACTGTAAGCCACACTTCAAG
CAGCTGTTCGAGCCCAAGCCGGTGGAGCACGACGAGCTGGACGCGGCTCCCAAGAAGCAC
CAGATGATTATATGTGAGAGCCAGCCGGTGGAACTTCCGCCGGACGTCGTCAGAGCATCA
GACAAACCCGAGCTGGGCCTGGAGGAGCTGGCGGCGCTGGACGTGAAGTCCAGGTTCCAG
GTGTTCGAGAAGAAGAACACGGAGGAGGTGAAGAAGGAAGACCTGGGACGAGCGCCCAAA
GGGAAGAGCGCCGCCGTACTGGCGAAGATGGCCAAAGAATATAAACCTTATCCCGCAAGG
AATACGGTATATGTTAGTATTCCTGGAGTCTTTGCTATTGAAAAACTAATGTACTGTCGC
GTGACGTCACCTCTCGGCAGTCACTACTCGCTAGACGCTAGTCAGTGTCGTGACCCGCGG
TCCGAGCGCCGGGTGTGCTCTGTGCAGCGAGCGGGCGTGCGATTCAAAGCCAAAGGTATG
GACATCGGCGTGTCGGAGGAGGCTCTGAACGGAGTGACCCTGGAACCCTCCTCCAGCGAC
CAGGAGGACGACGACGACGATGACTCGGTATTGAAGAAGTCGTACTCCCACAAGGCGATG
GTGGAGGCGCCCTCGGTAGAACTGTCCGAGCTGGTGGGCAGGTTCGAGAGACCCAGACCC
TCCAGGCATCAGCAGAGGAAGCAGGAGATACAGAACATTAGGAGCAGGCTGTTCCTGGGG
AAACAAGCCAAAATAAAGGAGATGTATGAACAGTCGGTGCTACAGTGTGAACAGAGTGTG
ACGTCAGCGGACAAGATCGCCAAGGAGCTGGAGGTGGACGCGGAGAAGGCGCGGGCCATC
AAGCAGAGGTTTGAGAACGGGGAGATATACAACGACGAGAACCGGCCGCCTAGGAACAGA
GACCTCGACGACAGAGCGCTCTTCGACGACGGTATCGCCAAGAAGTCTCGTTCCATCTTC
CTGGAGCTGGACGCCAACGCCAAGCACGCTTCGCCCGGAACCCCCGGCACCCCCACCGCC
GAGCCTCCAAGGAGGAAGGAGATACCCTTCGTGCCCAAGGACGTGATCCGCGCCGCCGAC
AAGCTGGAGGACGTGAAGATAGAAACCTCCGACATACACGACAGGTTCCAGTTCTTTGAG
ACTTACAAGCCGCAGGTGACGCGCAAGGAGTTCCGGGTCACGCCGCCCAGAGAACCACAG
CGCCCCAAGTCACCCTCGCCAGAGATCTACCACGAGCCGAGTGTGGTGAGGAGCGACGAG
CCTCCCGCGGACGCCGGGCTGGCGGCCAGCAGGCACACGGCGTCCAAGATGATAGACGTG
TTCCGGAAGATGGAACAGGACAGGAACAGACCCGACGACTGCCAGGGTCCGAAGCCCCTG
AAACGCTTCACGCCCCCTCCCCCGGGAGAGTCCGAGCGACACGGGAACACCAGCACCTCC
TCCGAGTACAGCGAGGACGAGGACAGCGACGACGAGGGGCTCAGGAGGTACCAGCAGGCC
CGGGAGCAGGACGAGGCGCTCAGACAGGCCCAGCAGTTGGCGCGCACCAAAAGCTTCAGG
GACAGATTCGAGAACTGGTCAGAGAGCGAGAGAGACGCCGAGCCACGCTCGCCCTCCGCT
GACCCGAGACACCTGCTGGACGACGGACAGTCACAGCTGGAGACGGCTAAGAGCCTCCGG
GAGAAGTTCGAGATGATGAAGATGCAGACGACCGTCACCAAGTCCGTCACGCCCAAGGTC
AACAGATTTGTGCCGTCTCCGCCGCCCGCCCTGTACCAAAGCTCGTCCTGCCCGCGCCGA
GTCCACACACGTCGTGTCGTCGGACTCCGCTCTGATATATTAGGATCCATTTTATTTACT
TCTCGTATATCCGTGCGCTTACTACAAGTCCCCGACCCCACACTACGTACGGAGCGTCTG
GAGTTTTCCGTTCATAAACCAAACGTTAAATGTTTTGTCGCCGCGTGCGTCGTGTGGGTC
GCAGCCTCGTGTCCTGCCCGTGCGGCGCTGGTCTCCGAGCGCCGCCTGCACGGACTCGCG
TCTTCTACGTATTTCACTATTCAGTCTCTACGCGTCTCTACAACAGGTTTATATATTCCC
TTGTATTTTAATATATTTTTAGTATTTCCGTCGCCCGCCAAGTCGTCTCTAACAGATGTT
AACGAGTCCCGCGTCTTCCTCCGCGCTTCTGTAACTTATTGTTATCGTTTTATTATAATC
ATTATCTTTGTTTGTAATCTCAATAACGTTTTGTACTTAACGTGTCTCTCCTGTATGTTT
GTACTCGGACTCCGAAATAAATAA
Protein sequence:
MATTMEASQSLIQSESRVSYQEVHVTERTKKKSKTRRHKDEGSISVSKSSEKLFKKMKAA
EGDNPTCAKCARPVYAMERVKAERRSWHRDCFRCVQCDRQLTVESYESDHTALYCKPHFK
QLFEPKPVEHDELDAAPKKHQMIICESQPVELPPDVVRASDKPELGLEELAALDVKSRFQ
VFEKKNTEEVKKEDLGRAPKGKSAAVLAKMAKEYKPYPARNTVYVSIPGVFAIEKLMYCR
VTSPLGSHYSLDASQCRDPRSERRVCSVQRAGVRFKAKGMDIGVSEEALNGVTLEPSSSD
QEDDDDDDSVLKKSYSHKAMVEAPSVELSELVGRFERPRPSRHQQRKQEIQNIRSRLFLG
KQAKIKEMYEQSVLQCEQSVTSADKIAKELEVDAEKARAIKQRFENGEIYNDENRPPRNR
DLDDRALFDDGIAKKSRSIFLELDANAKHASPGTPGTPTAEPPRRKEIPFVPKDVIRAAD
KLEDVKIETSDIHDRFQFFETYKPQVTRKEFRVTPPREPQRPKSPSPEIYHEPSVVRSDE
PPADAGLAASRHTASKMIDVFRKMEQDRNRPDDCQGPKPLKRFTPPPPGESERHGNTSTS
SEYSEDEDSDDEGLRRYQQAREQDEALRQAQQLARTKSFRDRFENWSESERDAEPRSPSA
DPRHLLDDGQSQLETAKSLREKFEMMKMQTTVTKSVTPKVNRFVPSPPPALYQSSSCPRR
VHTRRVVGLRSDILGSILFTSRISVRLLQVPDPTLRTERLEFSVHKPNVKCFVAACVVWV
AASCPARAALVSERRLHGLASSTYFTIQSLRVSTTGLYIPLYFNIFLVFPSPAKSSLTDV
NESRVFLRASVTYCYRFIIIIIFVCNLNNVLYLTCLSCMFVLGLRNK