| New model in OGS2.0 | DPOGS206226 |
|---|---|
| Genomic Position | scaffold2812:+ 35773-46438 |
| See gene structure | |
| CDS Length | 4155 |
| Paired RNAseq reads | 774 |
| Single RNAseq reads | 1927 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003286 (0.0) |
| Best Drosophila hit | frazzled, isoform B (2e-133) |
| Best Human hit | neogenin isoform 2 precursor (4e-67) |
| Best NR hit (blastp) | PREDICTED: similar to AGAP006083-PB [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | frazzled [Tribolium castaneum] (9e-161) |
| GeneOntology terms | GO:0001756 somitogenesis GO:0007399 nervous system development GO:0001841 neural tube formation GO:0016021 integral to membrane |
| InterPro families | IPR013783 Immunoglobulin-like fold IPR003599 Immunoglobulin subtype IPR003598 Immunoglobulin subtype 2 IPR003961 Fibronectin, type III IPR008957 Fibronectin type III domain IPR007110 Immunoglobulin-like IPR013098 Immunoglobulin I-set IPR010560 Neogenin, C-terminal |
| Orthology group | MCL11172 |
Nucleotide sequence:
ATGTTCAATCTTACGACGGAGCCGGCGGATGTGGTGGTGGTGGAAGGGGAGAGCGCCATG
CTGTCCTGCGGAGCCGCGGCCCCCGCCAGGCTCAGTTGGAGGTACAGCGCCTCCGCCCCT
CCGACCAGAGACCACAGCCTCCCACGAGCTGATAGCTTTAGGAAACAGTTGACGAACGGC
TCCCTGCTCATAGAGAGAATGTCACCACCACTGGCCGGTCAGTACCAATGTGTGGCGACG
GTAGATGGTATAGGTACCGTCGTGTCGCGAGTGGCCACTGTCTTCCTCGCTGAAGTGCCA
GAGTTCCTGGAGGGTCCTCGTACTATGTCTGGTGTGCTCGGCTCCCCAGCACTCCTCCCG
TGTTCCCTTAAGCTACCACTGCGTGTGGCTGTGAGGGTGATTGCTGCAGTCACTGAGAGG
AGAGTGTATGGACCAAACAAGATACATGCACCGCCTCCTGTGTTGAAACTCAATGTGACA
TGGCTAAAGAACGGTTCGCCGGTCCAAGTGGAGGCCGCTCGTCTATACAGCACCGTCAGC
GGAGCCCTGGAGATAGACCCTCTGAGGACGCACGACGCCGCCACATACAGATGTGCCGTC
AGCCTCGCGCACTCCAACAAACCACCAGTTCTGGGTCCGGAGATCGATCTCCGCGTGAAC
AGCGAGCTGGCGGGGATGGAGTCCGCGCCCAGGATACTCACCACGCCGCAGCCCGTCACG
GTCATAGAAGGCGCGTCCGTGACCTTCGACTGTGCGGCCACCGGCAACCCCAAGCCGGAG
ATCGTGTGGCTCAACAACGGCGTGGCCATAGACTTGAATGATCTAGACTCCCGTTTCTAT
CTGGTGGGGGGCGGCTCTCTCCGCGTGGTGTCGTCCCGGGCTCCGGACGCGGGCGCCTAC
ACCTGCCGCGCCACCAACAGGATCGACGCCGCCGACCACTCCGCTCACCTCCACGTCCTG
TCTCCCCCCCGCGTGTCGGTCCGCGACGGGTCGGTGGTGAGGGCGGTGACCCGCGGTGAT
GTCACTCTGAGATGCGACGCCCGCGGGCGACCGCCGCCAGTGGTGACGTGGCTGAAAGAC
GGGGAACCTCTCACACCGAACAACCACGACATCATGGTGGACGGGACCTCGCTGAGGATC
AGGGGAGTGCTGGACGTGGACGAGGGAGTGTTCCAGTGTGTCGCGGCCTCGGCTGCCGGC
AGCGCTGCCGCGGCGCTCAGGCTGATTGTGGCGCCGCACGCCGACCCCCTCCCCACGAAC
CTGACCCCTACCTTCCTGACCCCCGACCTCTACCCGGAAGATGTGGATTTCATCGGCGAG
ACGTCATCAGCGTTCACCCCCGAGCCTCTGTACGACGACTTAGATAACGTAGATTATTCC
GAAGATCTGGACTCCTACGACGCGGGCAAGGGGAACGCGAGCGTGGTCTCCGCGCCCGGG
GACTTCCGCGCCGTCATCGTCAAGCACCGCTTCGTGACGCTCAGCTGGACCGAGCCGAAA
CACGCGCTGGAAGAAGTCACCGGATACATCATACTGTATAAAGTGAAAGGAAGCGACCGG
GAGCGTCTGTGGTCGGGCGAGGCTCGGCGGCGCGAGGCCGTGTTGGCGTCCCTGGCTCCT
CGCACCACGTACACGGCGCGGGCCCTCGCCCTCACTCGCAGTGCAGCCTCGCCGCCGACA
GAGACTATAGAGGTGACCACTCCTGACGAGGAGCTGTCCTACGGCCCTCCTCAGAACGTG
TCGGTGGAGGCGGTGGGCGCTCACTCTCTGCGGGTGTGGTGGGCCCCGCCCGCGCCGCTC
GGGCCTCACGTGCCGCCTGAGGTGCCGCCCGCCGCTCCTGGCCGATACGTCATATACTAT
ACAGAGACGGAGAGTGGTCGCGAGCAGAGCCAGTACACCAACTCCACCAGCATCACCCTG
AGCGGTCTGCGGGCGGCCACCGCCTACCGGGTGCGGGTGTCGGCGGGGGGAGGGGGGACC
AGTGACGTCACCACCGCCACGCGAGCCGACGCCCCCTCCGCACCACCCACTGACGTCACC
GTCATCCCCGCCACGGATACGTCGCTACTAGTCCGCTGGTCGGCCCCGGCCGGGCGCTCG
CACCGCGGAGCCCTCACAGGATACAAGCTCCGGTACAGGACCCCCGGGGCGCGCCGCGCG
GACTCGCTCACCACTCCCGCAGACACCACGCGGGCGGACCTCACAGGACTGGAACCCTCC
ACCACCTACCAGGTCCGCGTGTGTGCTCTGAACGCTAACGGCTCCGGACCGTTCAGCGAG
TGGGTCTCGGCCACCACGCAGCCAAGACGGAGGCCTGAGAGCAGCGTGCCGGCGGCGCCG
CCTCCGCTCACCACTCGCGCCGGTCGCGACTGGATCTCCGTCTGGTGGGGCAGCGAGGAG
GGCTCCAACACACCGGGGGGAGGGGGCCCGGGGGCAGTCGGGGCGGGCGGCGGAGCACCC
GTGCGGGGGTACTGGCTGGGCTGGGGACTCGGCGTACCTGACTCACACTCCAGGGAACTG
CCTGCGCATGCGCATTCACATGTTATAAGAGATTTGGAATCCAACTCGGAGTACGTGATA
TCTCTCCGCGCCAGCAACACGCTGGGTCTGGGCCCGGCGGTGTACGCGACCGTCCGCACC
AAGCCCGACGACGGAGAAGACGAACCAGACGAGCCCGACCAGCCGGAGGACGACGCGCCG
CCTCTCATCCCGCCCGTGGGGCTCAAGGTTATCATGCTGAGCGGCACCACCGCCGTCGTG
TACTGGACCGACCCCACTCTACCCAAAGGACAGACGGCGGCGGACGGTCGACGGTACGCG
GTGCGGTGGTCGGGCGGCGGACGGTCGCGCGTCTACAACGCTTCGGATCTCAATCTCATG
TTGGACGATCTCAAACCTTACACGCACTACGAGTTCGCTGTCAAACTCATAAAAGGTGGT
CGCGAATCTCCCTGGTCGATGCTGGCCAGCAACACGTCCCTGGAGGCAGCCCCGGGCTCC
GCCCCCCCGGGAGCTGCGCGTGTCCCCCGCGGCTCCAGCCTCCGCGCCGCCGACTTAACG
TGGAGTCCACCCGCCAAGCCCAACGGAGTCATCACAGGCATGTTGACACGGTATGTGATA
ATGTACGGCGTGTCCCGCGGGTCGGGCGCCGCCGAGGAGTGGTCGGCTCTGGCGGCTCCC
GGGGAACGAGGCCGGGCCCGGGTGGACCGGCTCCGGGCGCGGACCACCTACAGCTTCAAG
ATACAGGCACGGAACAGTAGGGGACTGGGGCCCTTCAGCCCCGCCGTCACTTACACTACT
GGGATTGAGAGCGGTGAAGGCGCGGGTCTGGCGAGCGCCACGTCCGCGTGGTTGTGGGCC
AGTGCGGGCGGCGCCTGTGCCGTGCTGGCGCTCGCAGCAGCCCTCGCTCTGTCGCTGTGC
TGCAGAAGGAACACGCCTCCCATGTCCCCAGACACCAGCACTTACCAGAAAGCGTCCGCG
TCAGCTGGCATCAAGCCTCCAGACCTCTGGATCCACCACGACCAGATGGAGCTGAAGCAC
ATGGACAAGAGCTTACACAGCTCAGCCAGTAAGATATCAGCGGGTAGCGTCGAAGGCAGC
GCGTTGGTGTCGTCGACGTTGACCCTATCCCGCACCCCCACCCCACTCGCACCCTCACCC
CACCCCCGCTGCCCGCGCTCCCCGCCCCCCACCTGGCGGAGTACGAGCCGGCGCGCCATC
CGCCGCCCATCACCAGCCTCGACCGGCGATACGTCCCAACATACGTCGGGTGTTTGGAGT
AAGATGAACGAGATTGTTGGTCTTACAAACATTCGTTACGCCAATCGCCCTGTATATGTA
TACTTTGTGTTGCTTCCTCCCCTCCCTCCCGTGTATCCTGTCTGTATGTCTGTCTGTGTG
CACGTAGACCGTCGCTCGTCGTCGGGCAGCGCGGACACCGCCCCGCTCCGAGCCTCGCCC
CTCGACTACCGCTGCGACCTGCTAGCTATGACTGGTGTCGGAGTGGGCGTGGGCGTGGGC
TGCACCGGCACCTGCGAGCGACGGAGACATCTGGCGGATCAGAGCACGCCGCTGTTGACG
GGTGTAGCGCCGCTGGGGTCGCCGCAGTCCTCTCTGACGTCACATCCGCCCGCGCCATGT
AAGTATCCACACTGA
Protein sequence:
MFNLTTEPADVVVVEGESAMLSCGAAAPARLSWRYSASAPPTRDHSLPRADSFRKQLTNG
SLLIERMSPPLAGQYQCVATVDGIGTVVSRVATVFLAEVPEFLEGPRTMSGVLGSPALLP
CSLKLPLRVAVRVIAAVTERRVYGPNKIHAPPPVLKLNVTWLKNGSPVQVEAARLYSTVS
GALEIDPLRTHDAATYRCAVSLAHSNKPPVLGPEIDLRVNSELAGMESAPRILTTPQPVT
VIEGASVTFDCAATGNPKPEIVWLNNGVAIDLNDLDSRFYLVGGGSLRVVSSRAPDAGAY
TCRATNRIDAADHSAHLHVLSPPRVSVRDGSVVRAVTRGDVTLRCDARGRPPPVVTWLKD
GEPLTPNNHDIMVDGTSLRIRGVLDVDEGVFQCVAASAAGSAAAALRLIVAPHADPLPTN
LTPTFLTPDLYPEDVDFIGETSSAFTPEPLYDDLDNVDYSEDLDSYDAGKGNASVVSAPG
DFRAVIVKHRFVTLSWTEPKHALEEVTGYIILYKVKGSDRERLWSGEARRREAVLASLAP
RTTYTARALALTRSAASPPTETIEVTTPDEELSYGPPQNVSVEAVGAHSLRVWWAPPAPL
GPHVPPEVPPAAPGRYVIYYTETESGREQSQYTNSTSITLSGLRAATAYRVRVSAGGGGT
SDVTTATRADAPSAPPTDVTVIPATDTSLLVRWSAPAGRSHRGALTGYKLRYRTPGARRA
DSLTTPADTTRADLTGLEPSTTYQVRVCALNANGSGPFSEWVSATTQPRRRPESSVPAAP
PPLTTRAGRDWISVWWGSEEGSNTPGGGGPGAVGAGGGAPVRGYWLGWGLGVPDSHSREL
PAHAHSHVIRDLESNSEYVISLRASNTLGLGPAVYATVRTKPDDGEDEPDEPDQPEDDAP
PLIPPVGLKVIMLSGTTAVVYWTDPTLPKGQTAADGRRYAVRWSGGGRSRVYNASDLNLM
LDDLKPYTHYEFAVKLIKGGRESPWSMLASNTSLEAAPGSAPPGAARVPRGSSLRAADLT
WSPPAKPNGVITGMLTRYVIMYGVSRGSGAAEEWSALAAPGERGRARVDRLRARTTYSFK
IQARNSRGLGPFSPAVTYTTGIESGEGAGLASATSAWLWASAGGACAVLALAAALALSLC
CRRNTPPMSPDTSTYQKASASAGIKPPDLWIHHDQMELKHMDKSLHSSASKISAGSVEGS
ALVSSTLTLSRTPTPLAPSPHPRCPRSPPPTWRSTSRRAIRRPSPASTGDTSQHTSGVWS
KMNEIVGLTNIRYANRPVYVYFVLLPPLPPVYPVCMSVCVHVDRRSSSGSADTAPLRASP
LDYRCDLLAMTGVGVGVGVGCTGTCERRRHLADQSTPLLTGVAPLGSPQSSLTSHPPAPC
KYPH