| New model in OGS2.0 | DPOGS215213 |
|---|---|
| Genomic Position | scaffold1090:+ 20084-29437 |
| See gene structure | |
| CDS Length | 1269 |
| Paired RNAseq reads | 358 |
| Single RNAseq reads | 1123 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008721 (6e-179) |
| Best Drosophila hit | GluClalpha, isoform C (0.0) |
| Best Human hit | glycine receptor subunit alpha-2 isoform B precursor (2e-83) |
| Best NR hit (blastp) | glutamate-gated chloride channel [Plutella xylostella] (0.0) |
| Best NR hit (blastx) | glutamate-gated chloride channel [Plutella xylostella] (0.0) |
| GeneOntology terms | GO:0008068 extracellular-glutamate-gated chloride channel activity GO:0016021 integral to membrane GO:0045211 postsynaptic membrane GO:0006811 ion transport GO:0005886 plasma membrane |
| InterPro families | IPR015680 Glutamate-Gated Chloride Channel IPR006201 Neurotransmitter-gated ion-channel IPR006202 Neurotransmitter-gated ion-channel ligand-binding IPR006029 Neurotransmitter-gated ion-channel transmembrane domain IPR018000 Neurotransmitter-gated ion-channel, conserved site IPR006028 Gamma-aminobutyric acid A receptor |
| Orthology group | MCL10513 |
Nucleotide sequence:
ATGAACGGGAAGATAAACTTCAGGGAGAAGGAGAAACAGATCCTGGACCAGATCCTGGGC
CCCGGGAGATACGACGCTCGCATCCGGCCATCCGGCATCAACGGCACTGGCGATGCGCCA
ACGTTAGTCCGCGTCAACCTGTACCTACGATCCATCAGCAAAATAGATGATTACAAAATG
GAATACTCTGTCCAATTGACATTCAGAGAACAATGGTTAGATGAGAGATTGAAATTTAAC
AATTTAGGCGATCGTCTCAAGTACCTGACCCTCACGGAAGCCAACAGGGTATGGATGCCG
GATCTGTTCTTCTCCAATGAGAAAGAGGGGCACTTCCACAACATCATTATGCCGAACGTG
TACATCAGGATCTTCCCCAACGGGAACGTGCTGTACAGCATCCGAATCTCTCTCACCTTG
TCATGTCCGATGAACCTAAAGTTATATCCTTTGGACAAGCAGACGTGTTCTCTGAGAATG
GCCAGTTACGGCTGGACAACTGACGACTTGGTGTTCCTGTGGAAGGAAGGTGATCCAGTG
CAGGTGGTCAAGAACCTGCACCTCCCGCGGTTCACTCTGGAGAAGTTCCTCACAGATTAC
TGCAACAGCAAGACTAATACTGGTGAATACAGCTGTTTGAAGGTGGACCTGCTGTTCAAG
AGAGAGTTCAGTTACTACCTCATCCAGATCTACATTCCCTGCTGCATGCTGGTTATAGTG
TCGTGGGTGTCGTTCTGGTTAGACCAGGGAGCCGTTCCCGCCCGAGTGTCCCTTGGAGTG
ACGACCCTACTGACCATGGCGACTCAGTCGTCCGGGATCAACGCGTCCCTACCCCCCGTC
TCGTACACGAAGGCCATCGACGTATGGACGGGGGTGTGTCTGACCTTCGTGTTCGGGGCG
CTGTTGGAGTTCGCCCTGGTGAATTATGCGTCCCGCTCCGACATGCACAGGGAGAACATG
AAGAAAACGAGACGGGAGATGGAAGCGGCCGCCAGCATGGACGCCGCCTCCGACCTCCTC
GACACTGACAGTAACACGACCTTCGCTATGAAGCCGCTGATGCGCGGCGCCGGCGACAAG
ATGCGGCAGTGCGAGATCCACATCAAGAGCAAGCCCAAGAACTGCTGCCGCCTCTGGATG
TCCAAGTTCCCGACTCGCTCCAAGCGCATCGACGTCATATCACGCATCACCTTCCCGCTG
GTGTTCGCGCTCTTCAACCTCGCCTACTGGTCCACGTACTTGTTCCGTGACGAGGACGAA
GAGAAGTGA
Protein sequence:
MNGKINFREKEKQILDQILGPGRYDARIRPSGINGTGDAPTLVRVNLYLRSISKIDDYKM
EYSVQLTFREQWLDERLKFNNLGDRLKYLTLTEANRVWMPDLFFSNEKEGHFHNIIMPNV
YIRIFPNGNVLYSIRISLTLSCPMNLKLYPLDKQTCSLRMASYGWTTDDLVFLWKEGDPV
QVVKNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIV
SWVSFWLDQGAVPARVSLGVTTLLTMATQSSGINASLPPVSYTKAIDVWTGVCLTFVFGA
LLEFALVNYASRSDMHRENMKKTRREMEAAASMDAASDLLDTDSNTTFAMKPLMRGAGDK
MRQCEIHIKSKPKNCCRLWMSKFPTRSKRIDVISRITFPLVFALFNLAYWSTYLFRDEDE
EK