New model in OGS2.0 | DPOGS206425  |
---|---|
Genomic Position | scaffold303:+ 33453-35155 |
See gene structure | |
CDS Length | 1194 |
Paired RNAseq reads   | 33 |
Single RNAseq reads   | 146 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013823 (1e-177) |
Best Drosophila hit   | found in neurons, isoform A (9e-120) |
Best Human hit | ELAV-like protein 4 isoform 5 (2e-104) |
Best NR hit (blastp)   | PREDICTED: similar to RNA-binding protein, putative [Tribolium castaneum] (9e-139) |
Best NR hit (blastx)   | PREDICTED: similar to RNA-binding protein, putative [Tribolium castaneum] (3e-127) |
GeneOntology terms    | GO:0003729 mRNA binding GO:0000166 nucleotide binding GO:0003723 RNA binding |
InterPro families    | IPR012677 Nucleotide-binding, alpha-beta plait IPR006548 Splicing factor ELAV/HuD IPR000504 RNA recognition motif domain IPR002343 Paraneoplastic encephalomyelitis antigen |
Orthology group | MCL10689 |
Nucleotide sequence:
ATGTCGAAGGGCGACAGTGAACAGCAAAATGGCTCCGGCGAAGAGTCCAAGACCAACCTC
ATCATAAACTACCTGCCACAGAGCATGACCCAAGAGGAAATACGAAGCCTGTTCTCGAGT
ATCGGCGAAGTAGAGTCCTGCAAGCTGATCCGGAACAAAGGAGCGGCCTTCCCGGACGCC
TTGAACCACGCGCTACACGGCGGCGGACAGAGTCTTGGGTATGCCTTTGTTAACTATCAC
CGACCCGAAGACGCCGAGAAGGCTATCGCCACCCTCAATGGACTGCGGCTCCAGAACAAA
ACCATTAAGGTCTCGTACGCCAGGCCAAGCAGCGAAGCCATCAAAGGCGCCAATCTCTAC
GTTTCCGGCCTCCCGAAGACAATGACCCAAATAGAGTTGGAGAGATTATTCAGTCCATAC
GGTCGTATTATCACATCTCGTATACTCTGTGAGAATTCAGGCGGACGTCCATTCACCGGC
GGCGAGCAGGGCCTGTCTAAGGGAGTCGGCTTCATCAGGTTCGATCAACGCGTCGAGGCC
GAGAGAGCTATCCAGGAGTTAAACGGAACGGTCCCGAAGGGAGCCACTGAACCTATAACA
GTGAAATTCGCAAATAATCCAAGCAACAACGGAAAAGCGTTAGCACCGCTCGCAGCGTAC
CTTCCCGCAGCGCTTCGCTTCCCGGCGCCACTGGGAAGATTCAGCTCAGGCAAGTCCCTA
CTCGCTATAAATAAAGGTCTACAGCGCTACAGCCCTCTTGCCGGCGAACTGCTCGGCGGG
GTGCTACCAGGGGCGGTCGGCTCCGAGTGGTGTATCTTTGTTTACAACCTAGCCCCGGAG
ACCGAGGAAAACGTCCTCTGGCAGCTGTTCGGGCCATTCGGCGCCGTCCAGAGCGTGAAA
GTGATCCGCGACTTGCAGACCAACAAATGCAAAGGTTACGGCTTCATAACAATGACGAAT
TACGACGAAGCCGTGGTAGCCATACAGTCCCTGAACGGCTATACGCTCGGGAACAGAGTG
CTCCAGGAGATCATATCTTACGAAGTTCAGCGGCCGGCTCGGCTCGATTCGATAATGTTT
GCCAAATATATTGTCACTATAATCGCGTCCGTCGCTCGCGGGTCGCGGCTAAGTCTTAGC
CCAAGACTATCGGCTATACAGCCATCCGCGGTGAACGCGTCGATCCAACTATAA
Protein sequence:
MSKGDSEQQNGSGEESKTNLIINYLPQSMTQEEIRSLFSSIGEVESCKLIRNKGAAFPDA
LNHALHGGGQSLGYAFVNYHRPEDAEKAIATLNGLRLQNKTIKVSYARPSSEAIKGANLY
VSGLPKTMTQIELERLFSPYGRIITSRILCENSGGRPFTGGEQGLSKGVGFIRFDQRVEA
ERAIQELNGTVPKGATEPITVKFANNPSNNGKALAPLAAYLPAALRFPAPLGRFSSGKSL
LAINKGLQRYSPLAGELLGGVLPGAVGSEWCIFVYNLAPETEENVLWQLFGPFGAVQSVK
VIRDLQTNKCKGYGFITMTNYDEAVVAIQSLNGYTLGNRVLQEIISYEVQRPARLDSIMF
AKYIVTIIASVARGSRLSLSPRLSAIQPSAVNASIQL