| New model in OGS2.0 | DPOGS203890 |
|---|---|
| Genomic Position | scaffold3601:- 729-11609 |
| See gene structure | |
| CDS Length | 1218 |
| Paired RNAseq reads | 532 |
| Single RNAseq reads | 1712 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010477 (6e-115) |
| Best Drosophila hit | scavenger receptor acting in neural tissue and majority of rhodopsin is absent, isoform B (3e-67) |
| Best Human hit | scavenger receptor class B member 1 isoform 1 (5e-39) |
| Best NR hit (blastp) | scavenger receptor class B member 4 [Bombyx mori] (1e-134) |
| Best NR hit (blastx) | scavenger receptor class B member 4 [Bombyx mori] (5e-122) |
| GeneOntology terms | GO:0006952 defense response GO:0005044 scavenger receptor activity GO:0005887 integral to plasma membrane GO:0048102 autophagic cell death GO:0035071 salivary gland cell autophagic cell death GO:0007155 cell adhesion GO:0016020 membrane GO:0016116 carotenoid metabolic process GO:0007602 phototransduction GO:0016063 rhodopsin biosynthetic process |
| InterPro families | IPR002159 CD36 antigen |
| Orthology group | MCL16422 |
Nucleotide sequence:
ATGCGAGGGCGCGCCCCCCTTTATCGTCGGACGGCGGTCGCCGTGATAGCACTCCTCGCC
TGTGCCGCCCTGGTCACAGCGCTGATGTGGAATTCTGTCTTCGAATTAGCCTTTTTATCA
CAAGTGACATTAACGCCGACTTCCCGCGGCTACAAGGAATGGGTCGCACCTTCACTCCCT
CTCTTCTTTAACGTGTACGTTTTTAATTGGACCAACGCCGATCGGTTTCCGGAGGAGCTG
CCCAATCTGGAGGAACTAGGTCCGTATCGTTTTCGGGAACATCGTCGGCATATCAACGTG
TCCTTCAATAACCAGAACCACTCCGTGTCTTACCGAACTCAACGAAGCTGGTACTTCGAC
GAGGAGTTCAGCAACGGGACCATGAAGGATAACATAACTATTATAAACGTCATAGCAGCA
TCTGCAGTCTATCGTTCGAGACACTGGGGTTTTATTCAGCAGAAGGGTCTATCTATGGGT
CTCGCTATGCTGGGTCAAGGTTTCTCGGTGACGAGGACCGCTGAAGAACTGTTTTTCGAA
GGTTACGAAGATCCGTTTTTGGATATAGCGAGGATTCTTCCCTCAACCACAACCGGCGGG
GCGCCGCCAGTAGACCGGTTCGGTCTGTTTTACGAGAGAAATAATTCGATGGATACTGAG
GGTTTGGTAGAAGTAGCAACAGGAGAGGCCAGTGGAACTTATCCCGGACAGATACTCAGG
TGGAACAATTACGAAAGTCTTCCGTTTTATGAAGGGGCGTGCTCCCAGATAACTGGTAGC
GCTGGAGAGATGATGGCCCACAATTTGACCGAAGAGCCTTTCACTCTCTTTGTCCCAGAT
CTGTGTCGGACAGTCCACTTAGAGTATAATAGCAGCGGAAGTTTAGACGGAGTTCTCTAC
AACAAGTACACCATGACCGAAGCCAGCTTCGATAATTCTTCAAGATCTCCCGATAACGCC
TGCTTCTGCAGTGGTGAGTGCAGTTGGAGCGGTACAATGAATGTCTCCGCGTGTCGCTAC
GGCAGCCCGGCTTTCATGTCCTTGCCTCATTTTCTGTACGGGGATCCTGAACTGAGGTCC
TACGTCACAGGCTTATCGCCAGATCCTGAATTGCATTCCTTTTACTTCGCCATAGAACCG
AGACTCGGAGTGCCAGTGGATGTGGCGGGAAGATTTCAATTTAATATTTTTATTGAACCG
ACACCAAATATTGCGTGA
Protein sequence:
MRGRAPLYRRTAVAVIALLACAALVTALMWNSVFELAFLSQVTLTPTSRGYKEWVAPSLP
LFFNVYVFNWTNADRFPEELPNLEELGPYRFREHRRHINVSFNNQNHSVSYRTQRSWYFD
EEFSNGTMKDNITIINVIAASAVYRSRHWGFIQQKGLSMGLAMLGQGFSVTRTAEELFFE
GYEDPFLDIARILPSTTTGGAPPVDRFGLFYERNNSMDTEGLVEVATGEASGTYPGQILR
WNNYESLPFYEGACSQITGSAGEMMAHNLTEEPFTLFVPDLCRTVHLEYNSSGSLDGVLY
NKYTMTEASFDNSSRSPDNACFCSGECSWSGTMNVSACRYGSPAFMSLPHFLYGDPELRS
YVTGLSPDPELHSFYFAIEPRLGVPVDVAGRFQFNIFIEPTPNIA