| New model in OGS2.0 | DPOGS210519 |
|---|---|
| Genomic Position | scaffold296:+ 24848-30718 |
| See gene structure | |
| CDS Length | 1233 |
| Paired RNAseq reads | 395 |
| Single RNAseq reads | 1217 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012622 (8e-163) |
| Best Drosophila hit | prickle, isoform C (4e-85) |
| Best Human hit | prickle-like protein 2 (3e-72) |
| Best NR hit (blastp) | LIM domain only protein, putative [Pediculus humanus corporis] (7e-98) |
| Best NR hit (blastx) | PREDICTED: similar to prickle CG11084-PA, isoform A [Apis mellifera] (7e-93) |
| GeneOntology terms | GO:0042067 establishment of ommatidial planar polarity GO:0007163 establishment or maintenance of cell polarity GO:0008104 protein localization GO:0005515 protein binding GO:0005737 cytoplasm GO:0001736 establishment of planar polarity GO:0045185 maintenance of protein location GO:0016020 membrane GO:0045184 establishment of protein localization GO:0001737 establishment of imaginal disc-derived wing hair orientation GO:0008270 zinc ion binding GO:0001738 morphogenesis of a polarized epithelium |
| InterPro families | IPR001781 Zinc finger, LIM-type |
| Orthology group | MCL10621 |
Nucleotide sequence:
ATGTCTTCAGGTGACATGTGTGTATCGGCGGCCCGAGCCGGTCCTTCGGCGAGATGGCAT
CCCTCCTGCTTCGTGTGCAGCACCTGCCAGGAGCTGCTGGTGGACCTGGTGTACTTCTGG
AAAGACGGACGACTATACTGTGGACGGCATCACGCTGAAACACTAAAGCCCAGATGTTCT
GCCTGCGATGAGATAATATTGGCTGATGAGTGCACGGAAGCTGAGGGTCGAGCGTGGCAT
ATGAAACACTTCGCGTGTCAGGAATGTTCACGGCAACTGGGCGGACAGCGGTACATCATG
AGGGAAGCCAGGCCGTACTGCCTGCCTTGCTTCGACAATTGCTTCGCCGAATACTGCGAC
GCCTGCGGAGAGCCCATCGGCGTAGATCAAGGTCAGATGTCTCATGAGGGCCAGCACTGG
CACGCCACCGAGCGGTGCTTCGCATGTCATACGTGTAGAGCCAGTCTTCTCGGGCGTCCG
TTCTTACCTCGCAAGGGAGCTATATTTTGTTCTATAGCCTGCTCCAAAGGCGAACCACCA
ACGCCGTCAGATTCGTCAGGTCCTGGACCGAGACCACCACGCGTGCCAAGGCCAAGAAGA
TTGCCTTCGCCGAAATCACCAGAGAGAACTCCACCGAGGGAAGCCTCTCCCAACATAGAT
GCAGATTCGGAACCGAGCGCCTCTCTCGCCACTGAATCACCGCCGCCCCACCCTCCGCCG
CCGCCACATCCTTGCCTGAGCTTAGACAGAGCGTTGGCTGATTTAAAGTTAGAACAATCG
ATAACCGAGCACCAAATACCACCGACGCCAACCTCAGATGAAGTCCAAGAGGCCCCGGAA
TCCAATTGGAAACCACCTCATCCTGTGGAAGCTCAAACGGTTATAACACCCGGACACTCT
ACGTCAATGCCCGAATTGACGCTCGTAGATGGTAGGAGTCAGAAAAAGCCCCGAGGAGGC
CGAACAGTTCGATTCTGTGGTGACGACAACGAAGCCTTCGAACCTGATGAACCTGAACGG
AAAGACAAAAGTAAAGCAAGAGATGACGACGCCAGCAGTTACTGTAGCACGTGTTCTTCA
TCTTCCTCGTCCACCGAATCATACACTCTGCCTACTAGAAGAGCGTACGGCGGAGTCAGG
ATATCGTACGTGCCAAACGACGCCGTCGCTTGCGCAAAGAGGGAACGACAGAGAAAGAAC
AATCAACCAGATAAGAATTGTATCATCTCGTGA
Protein sequence:
MSSGDMCVSAARAGPSARWHPSCFVCSTCQELLVDLVYFWKDGRLYCGRHHAETLKPRCS
ACDEIILADECTEAEGRAWHMKHFACQECSRQLGGQRYIMREARPYCLPCFDNCFAEYCD
ACGEPIGVDQGQMSHEGQHWHATERCFACHTCRASLLGRPFLPRKGAIFCSIACSKGEPP
TPSDSSGPGPRPPRVPRPRRLPSPKSPERTPPREASPNIDADSEPSASLATESPPPHPPP
PPHPCLSLDRALADLKLEQSITEHQIPPTPTSDEVQEAPESNWKPPHPVEAQTVITPGHS
TSMPELTLVDGRSQKKPRGGRTVRFCGDDNEAFEPDEPERKDKSKARDDDASSYCSTCSS
SSSSTESYTLPTRRAYGGVRISYVPNDAVACAKRERQRKNNQPDKNCIIS