| New model in OGS2.0 | DPOGS210605 |
|---|---|
| Genomic Position | scaffold4224:+ 5550-6975 |
| See gene structure | |
| CDS Length | 615 |
| Paired RNAseq reads | 48 |
| Single RNAseq reads | 188 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | ND |
| Best Drosophila hit | xeroderma pigmentosum group A-like (1e-35) |
| Best Human hit | DNA repair protein complementing XP-A cells (2e-33) |
| Best NR hit (blastp) | GI16151 [Drosophila mojavensis] (1e-47) |
| Best NR hit (blastx) | DNA-repair protein, putative [Pediculus humanus corporis] (5e-42) |
| GeneOntology terms | GO:0000166 nucleotide binding GO:0006289 nucleotide-excision repair GO:0003684 damaged DNA binding GO:0005634 nucleus |
| InterPro families | IPR000465 XPA IPR009061 DNA binding domain, putative IPR022656 XPA C- terminal IPR022652 Zinc finger, XPA-type, conserved site |
| Orthology group | MCL12339 |
Nucleotide sequence:
ATGGAAACGGAATCAAGTAAAGAATGTCCGACTTCCGAGACCAAGGAGGGATCACTTACT
GCTGCCCAAAGGGCTCGGCTGGAGCGGAACAAGAGTAGGGCACTCGCACTGAGAGAAGCT
CGTCTTGTCAAGCGCCCAACAGAAGACAAGAACGACCGCATCGAAAAGAAGTCGATGCGT
CCGGTGGACTCCGGCGGCGGCTTCCTGCTGGAGGCAGAGGAGGACGTGGCGACCCCCGCG
CCCCGCGCCCCGCCTGCGCCCATCGTGCACCGCCCCGACCAGCCGCGCTGCCTTCACTGC
GGCTCGCCCTTTCCGCAGTCCTATCTGTTGGACACCTTCGATTACAACGCCTGCGACGCC
TGCAGGGACGACGAGGACAAACATGAGCTGATCACCCGGACGGAGGCCAAGAGCGAGTTC
CTGCTGAAGGACTGCGACCTGGACGCTCGGCCGCCGCCGCTGAGGTGTGTAAGGCGCCGA
AACCCGCACCGCGCGCGCTTCGCCGAGATGAGACTGTACCTGCGCGTGCAGGTGGAGCAG
CGCGCCCTCGAGGTGTGGGGCTCCGAGGAGCAGCTACGGCGGGAACGGGAGGAGCGGGAC
AGGCGCCGAGAATAG
Protein sequence:
METESSKECPTSETKEGSLTAAQRARLERNKSRALALREARLVKRPTEDKNDRIEKKSMR
PVDSGGGFLLEAEEDVATPAPRAPPAPIVHRPDQPRCLHCGSPFPQSYLLDTFDYNACDA
CRDDEDKHELITRTEAKSEFLLKDCDLDARPPPLRCVRRRNPHRARFAEMRLYLRVQVEQ
RALEVWGSEEQLRREREERDRRRE