New model in OGS2.0 | DPOGS202155  |
---|---|
Genomic Position | scaffold981:+ 18427-20916 |
See gene structure | |
CDS Length | 2490 |
Paired RNAseq reads   | 2221 |
Single RNAseq reads   | 5084 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003429 (0.0) |
Best Drosophila hit   | CG10333 (0.0) |
Best Human hit | probable ATP-dependent RNA helicase DDX23 (0.0) |
Best NR hit (blastp)   | GM17282 [Drosophila sechellia] (0.0) |
Best NR hit (blastx)   | DEAD box ATP-dependent RNA helicase [Aedes aegypti] (0.0) |
GeneOntology terms    | GO:0000398 nuclear mRNA splicing, via spliceosome GO:0004004 ATP-dependent RNA helicase activity GO:0005681 spliceosomal complex GO:0030532 small nuclear ribonucleoprotein complex GO:0005682 U5 snRNP GO:0003676 nucleic acid binding GO:0005524 ATP binding GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome |
InterPro families    | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
Orthology group | MCL13701 |
Nucleotide sequence:
ATGGGTAGAGAAAGAAGCGCAGAACGTCGACGATCTCGTTCTCGAGATAGGCGTGAGAGG
GACCGTCACGATGACCGCGATACTTATAAAGATAAATTAAAACGACGTGATAGATCCAGA
AGCCCGAGGAAAGAAAAATCCCGTAGTCCTTCGAAAAAGGAATCAGACGTTCGCTCTCGT
AGCCCAAGAAGAGAAAAAGAGCGTTCCAGAAGTCCGATTCGTAAAGAACGCGCCCGCTCT
AGAAGTCCACGTAAACGTGATGGCAAAGATAAAGACCGGCGGCCAGATGACAGAGAGAAG
AATAAAACTAAAAAGGAAGAAGAGAAAACAGAGGAAGAACCCAAAATGGAAGAAGAACCT
AAGCCCGTAAAACGAGAGCCTCTATCTCTAGAAGAGTTACTCGCCAAAAAGAAGGCTGAA
GAAGAGGCGCGAAGTAAACCAGTATTCTTAACAAAGGAACAACGAGCAGCCTTGGCACTC
GAAAGACGCAGAGAACAAGTTGAAGCCATGAGAGCTGCTGAACGACCAGCTGCGGTGGCG
ACGATAGATCTTACAGGAACTTCAAAGAAGGATGATGAAAAAAAATACCGTGACGACAGG
GAAAAAGAAAGGGAACACGACAAAGAGCGAGAAAGAGAAAGAGAGCGAGAAAGAGAGAAA
GAAAGAGAAAGAAGACACGAAGAGAGAAAATCAGGGGCCGATCGTAATAGAGATGATAAA
AAAGAGAAAAATGAAGAATACAGCAAAACTAAAGATAAAGAAAGAGAGGAAGAAGCCATC
AAAGCGAGGTACTTAGGTATAGTTAAAAAAAAGCGTCGAGTGAGACGGTTAAATGATCGG
AAGTTTGTATTTGATTGGGACGCTTCTGAAGACACATCAAATGATTACAATGCACTTTAT
AAGGAGAGACATCAAGTGCAATTTTTTGGACGCGGCCACATTGCTGGCATTGATATTAAA
TCACAGAAAAAGGATTATTGCAAATTCTATGGCAATTTGTTGGAGAAAAGGAGAACAGAA
TTGGAGAAAGAACAAGAAAAATCTCGCCTAAAGAAAGTTAAGAAGAAGGAAGACAAACAG
AAATGGGATGACAGACACTGGTCGGAGAAAGATCAAGATGAGATGACAGAGAGAGATTGG
AGAATCTTCAGAGAGGATTACAATATTACTTTGAAAGGTGGAAGAATACCTAATCCGATT
CGTTCATGGAAAGAAGCTAACTTTCATGAAGATATTATGGAGATCATTAGCAAAGTTGGC
TACAAAAGCCCTACACCTATTCAACGACAAGCCATTCCAATTGGTCTTCAAAATAGGGAC
ATAATTGGTGTAGCTGAAACTGGTTCTGGTAAAACATTAGCATTTCTCATACCACTGCTT
ACTTGGATACAGTCTTTGCCTAAAAATGAGAGGATGGAAGATGCTGATCAAGGTCCGTAT
GCTATAATTCTGGCCCCAACTCGTGAATTGGCACAACAAATTGAGGAAGAAACAAATAAG
TTCGGTATACCGCTTGGTATAACATCTGTCGTTGTTGTGGGAGGTCTGTCGAGGGAGGAG
CAAGGATTCAAGTTACGTCTAGGATGTGAGATCGTCATCGCCACGCCGGGTCGTCTCATA
GACGTATTAGAAAATCGATATCTTGTGCTCAATCGCTGCACTTATGTGGTTCTTGACGAA
GCCGATCGTATGATAGACATGGGTTTCGAACCTGATGTACAAAAAATTCTCGAATACATG
CCCGTGTCTAACATAAAACCCGACACAGATGCTGCCGAGGACGCATCAGTGCTTCTTGCT
AATTACAATTCTAAAAAGAAATTCCGTCAAACCGTGATGTTCACGGCTACTATGCCGCCG
GCCGTTGAAAGACTCGCCCGAACATATTTACGTAGGCCGGCCATAGTGTACATCGGATCT
GTTGGCAAACCAGTCGACAGAACAGAACAAGTCGTCTTCATGATCGGTGAGAATGAGAAA
CGCAGGAAGCTAACTGAGATATTACAACGCGGAGTCGAACCACCGATCATTATATTCGTC
AACCAAAAGAAGGGTGCAGATGTTCTTGCGAAAGGTTTGGAAAAACTGGGTTTCAATGCC
TGTACATTACATGGTGGTAAAGGCCAGGAACAACGTGACTTCGCTCTAGCTTCCCTCAAA
AATGGTTCGAAGGATATACTGGTTGCTACAGATGTGGCCGGTCGTGGTATTGATATTAAA
GATGTCAGTGTGGTCATTAATTATGACATGGCTAAGAGTATAGAAGACTACACACATCGC
ATTGGTCGTACCGGTCGTGCTGGCAAGACTGGTAAGGCTGTATCATTTGTTACTAAAGAG
GATTCTGCTATATACTATGATCTGAAGCAAGTGCTACTCGCCAGCTCAGTGTCCACATGC
CCTCCAGAGTTAATGAACCATCCAGAGGCTCAACACAAACCCGGAACTGTGGTAACCAAG
AAGAGAAGAGAGGAAATGATATTTGCTTAA
Protein sequence:
MGRERSAERRRSRSRDRRERDRHDDRDTYKDKLKRRDRSRSPRKEKSRSPSKKESDVRSR
SPRREKERSRSPIRKERARSRSPRKRDGKDKDRRPDDREKNKTKKEEEKTEEEPKMEEEP
KPVKREPLSLEELLAKKKAEEEARSKPVFLTKEQRAALALERRREQVEAMRAAERPAAVA
TIDLTGTSKKDDEKKYRDDREKEREHDKEREREREREREKERERRHEERKSGADRNRDDK
KEKNEEYSKTKDKEREEEAIKARYLGIVKKKRRVRRLNDRKFVFDWDASEDTSNDYNALY
KERHQVQFFGRGHIAGIDIKSQKKDYCKFYGNLLEKRRTELEKEQEKSRLKKVKKKEDKQ
KWDDRHWSEKDQDEMTERDWRIFREDYNITLKGGRIPNPIRSWKEANFHEDIMEIISKVG
YKSPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLTWIQSLPKNERMEDADQGPY
AIILAPTRELAQQIEEETNKFGIPLGITSVVVVGGLSREEQGFKLRLGCEIVIATPGRLI
DVLENRYLVLNRCTYVVLDEADRMIDMGFEPDVQKILEYMPVSNIKPDTDAAEDASVLLA
NYNSKKKFRQTVMFTATMPPAVERLARTYLRRPAIVYIGSVGKPVDRTEQVVFMIGENEK
RRKLTEILQRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLK
NGSKDILVATDVAGRGIDIKDVSVVINYDMAKSIEDYTHRIGRTGRAGKTGKAVSFVTKE
DSAIYYDLKQVLLASSVSTCPPELMNHPEAQHKPGTVVTKKRREEMIFA