| New model in OGS2.0 | DPOGS211231 |
|---|---|
| Genomic Position | scaffold3017:- 18752-28249 |
| See gene structure | |
| CDS Length | 3759 |
| Paired RNAseq reads | 1219 |
| Single RNAseq reads | 2903 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005168 (0.0) |
| Best Drosophila hit | twister (0.0) |
| Best Human hit | helicase SKI2W (0.0) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC009717 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC009717 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0004386 helicase activity GO:0003676 nucleic acid binding GO:0005524 ATP binding GO:0008026 ATP-dependent helicase activity GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0005634 nucleus |
| InterPro families | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 IPR012961 DSH, C-terminal IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL10731 |
Nucleotide sequence:
ATGTCTTTAAAATATGATGAGAAATTATTTTCAGACATAAAGCCACCACCGATTTTTGAA
GATTTAAGTGAAAGCATAAAAGATTATCTCTTGAAACCGGAGAAACTATCAATTCATAAA
TGGGAGAGATCACAAACACATTGGCACAGAAAATCGGATATAGATTCTTTGTTCAAAAGC
GATGATGAAGAACTAGGTATTGATACCACACTCGAAGTTGTTCGAGATCCTAGAACAGGG
GAAATTATAGGTCTGGAAGAGATAAATATACCAGTTCAAGATGACGAAGATAATCTATCC
ATGTCTCGGGCTCCATTGCCTCCTAACTTGGCTACTAGAGGCACAACTACTCAAAATCCT
TTTTTACCAGCTGGTTTTGAGGAGGAACTGCAAAAGATGTTGGATGAGGCGGCACAGAGT
TCCGAAATTGAAATTAATTTTGAAGATGATGAGCCTGGAAAATTTCTAGGAGAAGACATT
TTATCAACAGCGCCAGGTTCAAAGGAGGCTGTTTTGTTTGCTGAAGACGGAATGACTTTA
CTTGATCATCAGAAAGATGTACAAGAGGATAAAACTCAAGAACTGGATCTCAAGATAGAT
ATTGATTTGGAAGAAGTGGTTGATAATAATGCACACTTAGTTGGTCTCTGGAAAGATGAC
GAAAATGAGAAAAATGAGGTCTCGAAACCGATTAAGAAGATACAAATCGAAAAAGACAAG
GAAGAAGATAATTTCTTAGAGAGCACCATCATCAGACCACCCGTAGAACTTCCCGAGATA
CCAATATTAAACATAACAAACTCTGCCGTGAAGCTCGGAGTCACATCTACCGAGTGGGCC
GAAATGATTGATGTATCCCTACCGGTGCCAGATTTTAAAGAAAAAATAAAAGACATGGCA
CATTCATATCCATTTGAATTGGACAGCTTCCAGAAACAGGCTATACTTAAATTAGAAGAA
GGCCATCATGTATTTGTAGCTGCCCATACATCTGCCGGGAAGACAGTTGTAGCCGAGTAT
GCTATAGCCATGTCAAGAAGAAATTGTACCAGAGCAATCTACACATCACCAATCAAAGCC
CTATCAAACCAGAAGTACAATGATTTTAATAAAATGTTTGGTGAAGTTGGTCTCCTGACT
GGAGACCTTCAGATCAACGCTACAGCCTCCTGCCTCGTGATGACCACTGAGATACTAAGG
TCCATGTTGTACTGCGGCTCTGACGTCACCAGGGACCTAGAATTCGTTATATTCGATGAG
GTCCACTACATTAATAATACTGAGCGTGGCTATGTTTGGGAGGAGGTTCTAATTCTTCTT
CCTGCCCACGTCAGTATAGTGATGTTGAGCGCGACTGTACCCAACACTCTACAGTTCGCT
GACTGGGTGGGTCGTACTAAGAAGAGGAAAGTCTATGTCGTGTCTACGCCTAAGAGACCT
GTACCTTTGTGCCATTATTTATATACAGGGTCGGGAGGTAAATCGAAAAATGAAAGATTT
CTGGTCGTCGATCAAGAGGGTGCCTTTCAGTTGCGCGGTTACAATGAAGCTGCTGCCGCT
AAGAAGGCGAGAGAGAACGAATATAAGAAGAGTTTTGGCCCGAAAGGTGGAAAACAATTC
GGGAATCCTAAAGCCGAACAAACCATGTGGGTAGCGTTCATAGATCACCTGAGGAGCTGC
GATAAGTTGCCCGTCGTGGCTTTTACCTTGTCGAGAAATCGGTGTGATCAGAATGCTGAA
AATTTGATGTCAGTAGATTTAACAACGGCCAAAGAGAAAAGTCACATCAAATCATTCTTC
ATGAGATGTCTTCAGAGGTTGAAGGAGCCTGATAGAAAGCTTCCACAGGTGATACGTCTC
CAAAGAGTATTGGAGAACGGTATCGGGGTACATCACAGCGGTATATTGCCTTTGCTTAAA
GAAATCGTCGAAATGCTCTTCCAGTCCGGTCACGTGAAAATTCTTTTTGCGACGGAGACG
TTCGCTATGGGCGTCAACATGCCAGCGCGTACTGTAGTCTTCGATGATATCACCAAGTTC
GACGGCATACAGTCCAGGAGCCTCGCGCCAGCTGAGTACATACAGATGGCGGGCAGGGCA
GGGAGGCGAGGTTTGGACGATACAGGCACAGTGATAATCCTCTGCAAAGAAGGCGTTCCA
GATCAAGTGACGCTTAAAGGAATGATGTTGGGAACTCCACAGAAGCTGTCATCGCAGTTC
AGGCTGACATACGCCATGATACTCAGTTTATTGCGTGTAGCAACAGTATCAGTGGAGGGT
ATGATGCAGAGATCCTTTAGAGAATTCCATCAGATCTGCCAAGCCGACAACAACAGGAAA
CAACTGCAATTAGCTGAAAAGGAATATTCAGAGAAATGTAGCACACCCCTGCCATCGCAT
TTGGCGCCGTTAGCCACTTTCTATGACATAGCCATACAATATATAGACGTTTTAAATGAT
ATCATGCCAATATTACTGAACCAATCTAAAGTTGTTAAGGAATTCGTGCCAGGCAAGGTT
CTCATAATATCCGCCGGACCGTTCATAAATCAATTGGGTGTCTACTTGAACAACAGCGGT
CCCAGGCAAACCCCATACAAGGTACTAGTTTTAAACACAGCTGAACAAGATACAGCTAGA
TACAACTTTGATGTGGACGAAAATTGGTACAGGATGTTGGGCTTCTCTAAACTCTATGAA
AACATAGGTACTGAAGAAAGTACAATGGATCATACAATACTGTGTATAGCGCCTAAGAAT
ATTGTGGCTGTTACAAAAACTAATCTTAAAATTGATGCTAATCTCATCATAAGAGACTGG
GAGCAAAGACAGATGCCTCGTTTCAAGGATGCTCCAGTAGGTGCCACCTGTGGGCGATCA
GTGCAGGAGCTGTGCCAGTTATCTCACGCTTCACGCACTTCAACCGCCGGCCTGGAGACG
CTCAGTCTCACACAGGCACTCGCCATCACCACTGGAGAGATACTACAGACACTAGACAAG
ATGAACAAATACAAATCCGAGCTCGAGGCACAGAAGAAATACACAGATATAGCGAACTTC
AAGAGCGAATTCGCTGTTGTGTACGAACGGAAACAAGCTGAGAGGAAACGTGATAAGTAC
AAACGTCTTCTGTCCTTCGAAAATCTAGCTCTATATCCAGACTACCAGAGACGGTTGATG
GTTCTACGAGAACTGAACTATATAGATGATCATGACAGCGTTATCTTAAAGGGTCGTGTT
GCGTGCTGTATGGGCACTAACGAGCTTATCATATCAGAACTGGTGTTCCGGAATGTATTC
ACCGATAAAAATCCAGCGGAAATCGCGGCACTCCTCAGCTGTTTCGTGTTCCAAGCTAAG
ACTAGAGTGGAACCGGCTTTGACTGAGAAGTTACAGGCTGGTGTTAAGGCTATAGAACAG
ATTGATGATGAACTTACTAGGATCGAGGCTAAATATATGGTCGGACAATTCGAAGGTCAA
GCAGAGAGATTAAACTTTGGTCTAGTGAGAGTTGTCTATGAATGGGCCCTAGAAAAACCG
TTTGCAGAAATCATAGACTTGACAGATGTTCAAGAAGGTATTATTGTGAGATGCATCCAG
CAACTTCATGAGCTCTTAGTTGATGTGAAAGACGCAGCAGTTGCAATTGGTGATCCAAAA
CTTCAAGCAAAAATGATGGAGGCTTCCACAGCTATAAAGAGGGACATAGTTTTTGCAGCA
AGTTTATATACTACTCAGCGAGAGACAGTGATATTATGA
Protein sequence:
MSLKYDEKLFSDIKPPPIFEDLSESIKDYLLKPEKLSIHKWERSQTHWHRKSDIDSLFKS
DDEELGIDTTLEVVRDPRTGEIIGLEEINIPVQDDEDNLSMSRAPLPPNLATRGTTTQNP
FLPAGFEEELQKMLDEAAQSSEIEINFEDDEPGKFLGEDILSTAPGSKEAVLFAEDGMTL
LDHQKDVQEDKTQELDLKIDIDLEEVVDNNAHLVGLWKDDENEKNEVSKPIKKIQIEKDK
EEDNFLESTIIRPPVELPEIPILNITNSAVKLGVTSTEWAEMIDVSLPVPDFKEKIKDMA
HSYPFELDSFQKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMSRRNCTRAIYTSPIKA
LSNQKYNDFNKMFGEVGLLTGDLQINATASCLVMTTEILRSMLYCGSDVTRDLEFVIFDE
VHYINNTERGYVWEEVLILLPAHVSIVMLSATVPNTLQFADWVGRTKKRKVYVVSTPKRP
VPLCHYLYTGSGGKSKNERFLVVDQEGAFQLRGYNEAAAAKKARENEYKKSFGPKGGKQF
GNPKAEQTMWVAFIDHLRSCDKLPVVAFTLSRNRCDQNAENLMSVDLTTAKEKSHIKSFF
MRCLQRLKEPDRKLPQVIRLQRVLENGIGVHHSGILPLLKEIVEMLFQSGHVKILFATET
FAMGVNMPARTVVFDDITKFDGIQSRSLAPAEYIQMAGRAGRRGLDDTGTVIILCKEGVP
DQVTLKGMMLGTPQKLSSQFRLTYAMILSLLRVATVSVEGMMQRSFREFHQICQADNNRK
QLQLAEKEYSEKCSTPLPSHLAPLATFYDIAIQYIDVLNDIMPILLNQSKVVKEFVPGKV
LIISAGPFINQLGVYLNNSGPRQTPYKVLVLNTAEQDTARYNFDVDENWYRMLGFSKLYE
NIGTEESTMDHTILCIAPKNIVAVTKTNLKIDANLIIRDWEQRQMPRFKDAPVGATCGRS
VQELCQLSHASRTSTAGLETLSLTQALAITTGEILQTLDKMNKYKSELEAQKKYTDIANF
KSEFAVVYERKQAERKRDKYKRLLSFENLALYPDYQRRLMVLRELNYIDDHDSVILKGRV
ACCMGTNELIISELVFRNVFTDKNPAEIAALLSCFVFQAKTRVEPALTEKLQAGVKAIEQ
IDDELTRIEAKYMVGQFEGQAERLNFGLVRVVYEWALEKPFAEIIDLTDVQEGIIVRCIQ
QLHELLVDVKDAAVAIGDPKLQAKMMEASTAIKRDIVFAASLYTTQRETVIL