| New model in OGS2.0 | DPOGS212223 |
|---|---|
| Genomic Position | scaffold123:- 110291-120852 |
| See gene structure | |
| CDS Length | 615 |
| Paired RNAseq reads | 15 |
| Single RNAseq reads | 213 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004409 (1e-57) |
| Best Drosophila hit | short stop, isoform A (3e-50) |
| Best Human hit | plectin isoform 1f (5e-41) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC009077 [Tribolium castaneum] (9e-71) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC009077 [Tribolium castaneum] (1e-68) |
| GeneOntology terms | GO:0003779 actin binding GO:0005178 integrin binding GO:0005515 protein binding GO:0005737 cytoplasm GO:0007409 axonogenesis GO:0008017 microtubule binding GO:0008022 protein C-terminus binding GO:0008090 retrograde axon cargo transport GO:0015629 actin cytoskeleton GO:0015630 microtubule cytoskeleton GO:0016023 cytoplasmic membrane-bounded vesicle GO:0030056 hemidesmosome GO:0031110 regulation of microtubule polymerization or depolymerization GO:0031122 cytoplasmic microtubule organization GO:0035371 microtubule plus end GO:0045104 intermediate filament cytoskeleton organization GO:0051010 microtubule plus-end binding GO:0060053 neurofilament cytoskeleton |
| InterPro families | IPR001715 Calponin homology domain IPR001589 Actinin-type, actin-binding, conserved site |
| Orthology group | MCL19592 |
Nucleotide sequence:
ATGTCTACTCAAGCGTATTACAAGGAACGCCTGGGGTTCGATCCTCAAGAGGCGATGCAG
GACGGCGTCAACGGCTCGTACTACGATGGACCCTACCAGCCCAAGAGACACCGCGGCGAA
CACAAGGAGAGCCACGACCAGGTTTACGAGGAGAATCTGACGAAATTTAAAGATGAAAGG
GACGCGATCCAGAAGAAGACGTTCACTAAATGGGTCAACAAACATCTCAAAAAGGTTTTT
GCATATTTCACGCTGCTCGGACAGACGTACACACGTCTCCATGTATGTGAGATAGTGAAT
AACCAACCCTGTTGTCCCCCGCAACAAGTGAATCGTCACGTAAACGACCTGTTTGAAGAC
CTGCGGGATGGACTCAACCTCATCTCGCTGCTGGAGGTGCTTTCTGGCGAACACCTCCCG
CGCGAGAGAGGACGTATGCGTTTCCACATGCTGCAGAATGTCCAGATGGCGCTGGACTTC
CTGCGGTACAAGAAGATCAAGCTGGTTAACATACGAGCTGAGGACATCGTGGACGGGAAT
CCCAAGCTGACCCTGGGCTTGATATGGACAATCATCCTGCATTTCCAGGTCAGTGGAAAT
CTTTCAAACATCTAG
Protein sequence:
MSTQAYYKERLGFDPQEAMQDGVNGSYYDGPYQPKRHRGEHKESHDQVYEENLTKFKDER
DAIQKKTFTKWVNKHLKKVFAYFTLLGQTYTRLHVCEIVNNQPCCPPQQVNRHVNDLFED
LRDGLNLISLLEVLSGEHLPRERGRMRFHMLQNVQMALDFLRYKKIKLVNIRAEDIVDGN
PKLTLGLIWTIILHFQVSGNLSNI