New model in OGS2.0 | DPOGS208921  |
---|---|
Genomic Position | scaffold31:- 233892-249338 |
See gene structure | |
CDS Length | 2238 |
Paired RNAseq reads   | 1199 |
Single RNAseq reads   | 3287 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA002496 (2e-69) |
Best Drosophila hit   | CG5807 (2e-64) |
Best Human hit | protein LMBR1L (1e-40) |
Best NR hit (blastp)   | PREDICTED: similar to CG5807-PA isoform 1 [Apis mellifera] (1e-140) |
Best NR hit (blastx)   | PREDICTED: similar to lipocalin-1 interacting membrane receptor (limr) [Tribolium castaneum] (1e-95) |
GeneOntology terms    | GO:0016021 integral to membrane GO:0016020 membrane GO:0006897 endocytosis GO:0004872 receptor activity GO:0005886 plasma membrane GO:0005575 cellular_component GO:0003674 molecular_function GO:0008150 biological_process |
InterPro families    | IPR008075 Lipocalin-1 receptor IPR006876 LMBR1-like membrane protein |
Orthology group | MCL12781 |
Nucleotide sequence:
ATGGATGATGAGGAGGCGGACTTGCGTGAGCAGATATTCCACAATAATGTTAGGGAGCAG
ATAATATTTCTTCTGCTTTTTATACTCCTGTATCTATTATCGTTTATTCTCATCGAGAAG
TTCCGTCGTCGTGACAGTGAGGATTATTTTACGGCTGATGAAGATGAAGTTAAGGTTTAT
AGAATCAGCTTGTGGCTTTGTACCTTCTCACTGGCCGTATCTCTAGGTTCTGCACTCCTG
CTGCCAGTATCAATAGTCAGCAATGAAGTGCTCATACTGTACCCAAACAGCTATTATGTT
AAGTGGCTCAATAGCTCACTCATTCAAGGGCTATGGAATCATGTGTTCTTATTTTCAAAT
TTGTCATTGTTTGTGTTCCTGCCATTTGCATATCTTTTTTCTGAGTCCACTGGATTCCCA
GGCTGTAGAGGTCTGAAGGGCCGTGTATATGAGACCTTTATTGTGTTGGCTCTATTAGGA
GTGGCTATGCTGGGCTTGGCATATGTTATCTCAGCTTGGCTGGAAGGTGACAGATCTAGT
TTGGATGCATTATTGAATCTATGGACATATCTGCCGTTTCTCTACTCCTGTGTGTCGTTT
GTTGGTGTCCTCATGTTACTTGTGTTCACTCCGTTGGGCTTCGTCCGTCTCTTTGGTGTG
GTGGGTGGAGTGCTCGTGAAGCCGCAGTTCCTGAGGGACCTCAACGAGGAATACTACGTG
TACTCATTTGAAGAAGATACCATAAGACGTAGAATTAACAATGCGGTAAACACAGGAGTG
GGCTACATATCACCTGAGCCGATGTACCCTGATCGCGGAGACATATCCGCTCCTGTTACT
CCTGATGTCTCGAAGGACGGAATTTCAGTTAACAAGGAAACGCCGTTATTGAGACTCAGT
AATGGCGCCCTACAAGCCGGCCTGAATCAGAGGCTCAGACAGGTCGTCGCTATGAGGAAG
GAAGTAGAGAGCCAACGGAAGACGTCATCGTTCCAGCGTAACGTGGTGTATCCCCTGGCT
ATGCTGCTGTTGCTGGCGTTGACCACCATCACCGTCCTCATGGTGCTGCAGAATACACTC
GAGCTGCTCATCGGCATTAAGGCACTGCCGCTCAGTACCCGGCAATTCACATTGGGCATC
GCGTCTCTATCTAAATTGGGTTGGGCGGGCGCTTCGTTGGAGGCTGGTTTGATCCTGTAC
TTGCACGCGGCCTCCTTGACCGGCCTGGGTACGCCGTTGCGTGCTCTGCGCGTGCTGCCT
AGAGCACGACGCACGCCGCTCGCACGAATCATCGCGCTATGTACGGTGCTGCTCGCGCAC
TCCACGGCTCAACCTCTACTGGTTAAGATACTCGGAGTGGGCTACATATCACCTGAGCCG
ATGTACCCTGATCGCGGAGACATATCCGCTCCTGTTACTCCTGATGTCTCGAAGGACGGA
ATTTCAGTTAACAAGGAAACGCCGTTATTGAGACTCAGTAATGGCGCCCTACAAGCCGGC
CTGAATCAGAGGCTCAGACAGGTCGTCGCTATGAGGAAGGAAGTAGAGAGCCAACGGAAG
ACGTCATCGTTCCAGCGTAACGTGGTGTATCCCCTGGCTATGCTGCTGTTGCTGGCGTTG
ACCACCATCACCGTCCTCATGGTGCTGCAGAATACACTCGAGCTGCTCATCGGCATTAAG
GCACTGCCGCTCAGTACCCGGCAATTCACATTGGGCATCGCGTCTCTATCTAAATTGGGT
TGGGCGGGCGCTTCGTTGGAGGCTGGTTTGATCCTGTACTTGCACGCGGCCTCCTTGACC
GGCCTGGGTACGCCGTTGCGTGCTCTGCGCGTGCTGCCTAGAGCACGACGCACGCCGCTC
GCACGAATCATCGCGCTATGTACGGTGCTGCTCGCGCACTCCACGGCTCAACCTCTACTG
GTTAAGATACTCGGTATAACAAATTTCGATCTGCTGGGAGAGTTCGGTCGTATAGAGTGG
CTCGGTAATTTCAAACTGGTGCTCCTCTACAACGCTATCTTCGCGGCCACTGTGACTCTA
TGTCTGGTCAGCAAGTTCACAGCGAGCGTGAGAAGAGAACTATATAACAGATTTAAATGG
GTGGCCAATATGTTCAGTGTGCCAGAAGAAGTGCCGAGTGGGAATATTACAAAAACGAAT
AAACGAGTAAGTACGGAACGCTCGTTCAACATTGAGAAGACTGAATCACTAGATCCATCA
CATTTGAAAACAGAGTAG
Protein sequence:
MDDEEADLREQIFHNNVREQIIFLLLFILLYLLSFILIEKFRRRDSEDYFTADEDEVKVY
RISLWLCTFSLAVSLGSALLLPVSIVSNEVLILYPNSYYVKWLNSSLIQGLWNHVFLFSN
LSLFVFLPFAYLFSESTGFPGCRGLKGRVYETFIVLALLGVAMLGLAYVISAWLEGDRSS
LDALLNLWTYLPFLYSCVSFVGVLMLLVFTPLGFVRLFGVVGGVLVKPQFLRDLNEEYYV
YSFEEDTIRRRINNAVNTGVGYISPEPMYPDRGDISAPVTPDVSKDGISVNKETPLLRLS
NGALQAGLNQRLRQVVAMRKEVESQRKTSSFQRNVVYPLAMLLLLALTTITVLMVLQNTL
ELLIGIKALPLSTRQFTLGIASLSKLGWAGASLEAGLILYLHAASLTGLGTPLRALRVLP
RARRTPLARIIALCTVLLAHSTAQPLLVKILGVGYISPEPMYPDRGDISAPVTPDVSKDG
ISVNKETPLLRLSNGALQAGLNQRLRQVVAMRKEVESQRKTSSFQRNVVYPLAMLLLLAL
TTITVLMVLQNTLELLIGIKALPLSTRQFTLGIASLSKLGWAGASLEAGLILYLHAASLT
GLGTPLRALRVLPRARRTPLARIIALCTVLLAHSTAQPLLVKILGITNFDLLGEFGRIEW
LGNFKLVLLYNAIFAATVTLCLVSKFTASVRRELYNRFKWVANMFSVPEEVPSGNITKTN
KRVSTERSFNIEKTESLDPSHLKTE