| New model in OGS2.0 | DPOGS208940 |
|---|---|
| Genomic Position | scaffold31:+ 121932-124315 |
| See gene structure | |
| CDS Length | 2016 |
| Paired RNAseq reads | 2093 |
| Single RNAseq reads | 5063 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002413 (0.0) |
| Best Drosophila hit | contactin (0.0) |
| Best Human hit | contactin-4 isoform c precursor (3e-76) |
| Best NR hit (blastp) | contactin [Papilio xuthus] (0.0) |
| Best NR hit (blastx) | contactin [Papilio xuthus] (0.0) |
| GeneOntology terms | GO:0007155 cell adhesion GO:0005918 septate junction GO:0005488 binding GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity GO:0019991 septate junction assembly GO:0005919 pleated septate junction GO:0008366 axon ensheathment GO:0021682 nerve maturation GO:0060857 establishment of glial blood-brain barrier GO:0005886 plasma membrane |
| InterPro families | IPR003599 Immunoglobulin subtype IPR003598 Immunoglobulin subtype 2 IPR003961 Fibronectin, type III IPR008957 Fibronectin type III domain IPR013783 Immunoglobulin-like fold IPR013098 Immunoglobulin I-set IPR007110 Immunoglobulin-like |
| Orthology group | MCL10346 |
Nucleotide sequence:
ATGTACCAATGTGAGGCCAAGAACCAGCTAAGAACAAAGTATTCCACTGGCCAGTTACGT
GTGCTGTCATTGAAGCCATCATTTAAGAAGCATCCATTAGAGTCCGAAACATATGGATCA
GAAGGTGGGAATGTGACTCTCAGGTGTAACCCTGAAGCTGCGCCAAAGCCTACATTCACG
TGGAAGAAAGATAACATTGTCATAGGTGCCGGAGGGAAGAGGTTTATTACGGAGAATGGA
AATCTTATTATAAGACAACTATCTAGAGACGATGAAGGTGTTTACACTTGTGTTGCCAAG
AATCAGTACGGCACGGACGAGAGTCGGGGACGTCTTATAGTTCTTAGAGCCCCTCGTTTC
ATTGAACGATTACCTCCAAGAATAACAACACAGGTAGGACAAGTCATTTTCCTTCATTGT
AATGCTGAAATAGATTCTATGCTCGACACAGCTTACTTGTGGAATCACAATGGTATCAGG
ATGAAGGAAGCTGCTGATCTGTACGCAGATAAACGAATTAAAATCGACGGTGGTGAACTT
ACGATATTCGACGTGAGTTTGTCGGATGTTGGAGAATACGAGTGCATTGTAAAATCAGCC
ATAGGTCGTATTTCGACTCGCACACAATTACGTATAGAAGGGCCGCCTGGTCCACCTGGT
GGTGTACAGGTTTCAAATATTCAACAGTCTTCTGTTACCCTGGAATGGACCGACAGCAAT
CCTAATGGACGTCCTATAACTAATTATGTTGTCACGGGACGAACACAATGGAATTCAACT
TGGTTTGTGTTGAGCGAGAGTGTCACAAATGTATTTGAAATAGACAGATACAATGGACGC
AAACGAGCCACCGTAACCACAACCTTGATGCCTTGGTCTGTGTATGAGTTCAGGGTCCAA
GCTGTCAATAGTTTAGGTATAGGGGAACCGTCTTCTCCTAGTCCTCAATTCTCCACACAA
GCCGATAAGCCCTATCACAGTCCTTTCAACATTGGAGGTGGTGGTGGAAAAATTGGAGAC
CTTACCATTAAGTGGACACCGCTACCAAGATCCTTGCAAAACGGTCCAGGCATTTACTAT
AAGATATTTTGGCGTCGGAATAACACAGAAGTCGAATTTCAGTCACTTTCACTTAAAGAA
TATGGGAACATAGGAATGCACGTTGTACACGTACCTTTGGATTACTTCTTCACTCCTTAC
AATATAAAAGTGCAGGCGTTCAATGACATTGGCGCGGGTCCCGAGAGTGAGGTAGTCACT
ATATATTCTGCTGAAGATATGCCTCAAGTCGCCCCTCAGCAAGTATATTCAAGATCATTC
AACTCTACCTCTCTTAATGTAACGTGGAACCCTATCGACCAGTCACGTGATAGACTACGA
GGGAAATTAATCGGTCACCGTCTTAAGTACTGGAAGCAAGCTAACAAGGAAGAGGAATGC
ATCTACTATTTATCAAGAACAACACGCAATTGGGCTTTGATTGTAGGGCTCCAGCCAGAC
ACATACTATTATGTCAAAGTTATGGCGTTTAATTCAGCTGGTGAAGGTCCGGAAAGCGAG
CGATACTTGGAGCGTACATACAGGAAGGCTCCTCAGAAGCCCCCTGCTTCTGTCAACGTG
TGGGCTGTCAACCCCAGCACCGTGCGAGTTGTTTGGCGATATGTCCAGCCCACTGACGAA
GAGGAACCTCTCATAGGCTATAAGGTGAGAGTGTGGGAGATAGATCAAGATATGAGCACG
GCTAATGACACTTTAGTGCCGGTGGAACATAAATTGGAAGCGTATGTCAATAGTTTGACT
CCAGGGAAGTCTTATAACCTGAGAGTCTTGGCTTACTCCAATGGTGGGGACGGCAGGATG
TCCTCTCCCCCAATAACATTCCAAATGGGCGACTACCACAGTGATGCTTACGGATACTAT
GTTAGAAGTGCAGCTCATAAACAAAATGTCTCTCACATATACTCTGTAGAAATGTTTCTA
TTTTATATATTTTTCTTAACTTGTTACAGTCTGTAG
Protein sequence:
MYQCEAKNQLRTKYSTGQLRVLSLKPSFKKHPLESETYGSEGGNVTLRCNPEAAPKPTFT
WKKDNIVIGAGGKRFITENGNLIIRQLSRDDEGVYTCVAKNQYGTDESRGRLIVLRAPRF
IERLPPRITTQVGQVIFLHCNAEIDSMLDTAYLWNHNGIRMKEAADLYADKRIKIDGGEL
TIFDVSLSDVGEYECIVKSAIGRISTRTQLRIEGPPGPPGGVQVSNIQQSSVTLEWTDSN
PNGRPITNYVVTGRTQWNSTWFVLSESVTNVFEIDRYNGRKRATVTTTLMPWSVYEFRVQ
AVNSLGIGEPSSPSPQFSTQADKPYHSPFNIGGGGGKIGDLTIKWTPLPRSLQNGPGIYY
KIFWRRNNTEVEFQSLSLKEYGNIGMHVVHVPLDYFFTPYNIKVQAFNDIGAGPESEVVT
IYSAEDMPQVAPQQVYSRSFNSTSLNVTWNPIDQSRDRLRGKLIGHRLKYWKQANKEEEC
IYYLSRTTRNWALIVGLQPDTYYYVKVMAFNSAGEGPESERYLERTYRKAPQKPPASVNV
WAVNPSTVRVVWRYVQPTDEEEPLIGYKVRVWEIDQDMSTANDTLVPVEHKLEAYVNSLT
PGKSYNLRVLAYSNGGDGRMSSPPITFQMGDYHSDAYGYYVRSAAHKQNVSHIYSVEMFL
FYIFFLTCYSL