| New model in OGS2.0 | DPOGS212310 |
|---|---|
| Genomic Position | scaffold10197:+ 646-3735 |
| See gene structure | |
| CDS Length | 1374 |
| Paired RNAseq reads | 158 |
| Single RNAseq reads | 597 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001833 (3e-16) |
| Best Drosophila hit | Dicer-1 (4e-29) |
| Best Human hit | endoribonuclease Dicer isoform 1 (2e-18) |
| Best NR hit (blastp) | PREDICTED: similar to dicer 1 [Acyrthosiphon pisum] (4e-37) |
| Best NR hit (blastx) | dicer-1 [Blattella germanica] (2e-30) |
| GeneOntology terms | GO:0003725 double-stranded RNA binding GO:0016443 bidentate ribonuclease III activity GO:0030422 production of siRNA involved in RNA interference GO:0016246 RNA interference GO:0005515 protein binding GO:0004386 helicase activity GO:0005524 ATP binding GO:0035196 production of miRNAs involved in gene silencing by miRNA GO:0035087 siRNA loading onto RISC involved in RNA interference GO:0016442 RNA-induced silencing complex GO:0031054 pre-microRNA processing GO:0035195 gene silencing by miRNA GO:0042078 germ-line stem cell division GO:0005737 cytoplasm GO:0005634 nucleus GO:0045448 mitotic cell cycle, embryonic GO:0007279 pole cell formation GO:0033227 dsRNA transport GO:0007367 segment polarity determination GO:0048813 dendrite morphogenesis |
| InterPro families | IPR000999 Ribonuclease III |
| Orthology group | MCL11509 |
Nucleotide sequence:
ATGGGAGTTAGGATAGAGTACAAAACCGCTCACGAAGCAGAAGCTGTGGACATAGAACGT
CGAAGGCCTATCGCGCCGGCCCCTCAACCGGATGCACTTGATGACGCTCGTGACTTGAAG
GAATGGGGACAGGTGTTGAGGGAAGGGACCGCCCCAGAAGAGTATGTGAAGAAGTTCAAG
AACGCAGTATTGAAACACGAAGCTGATATAAAGGATAAAGGTTATTTAATTGACAAGGAC
ACACCTATAGTTGAGTTACTTCCTGAAACTACGAAAGATTTAGACAAAACTAATAGTGAA
ATATTGAAAGTAACTGTGAAAAGTGATTCAAATTTAATGAACGGGGACGACACATCGACA
ATAGAAGTTTGTGATTCCGTTCATACACAGACTGAAGATGTACAAATAAAAGATAAAATA
GATAAAGATAAAAATACGACAGATTTCATAGACGACATATTTCCTTACGGTAATCTATTA
GAAGTCGAAAACGGTCAAATAACATTAGAATCGATAGAAAGAAACAAAAGATTATTATTA
GCGGAAATAAAGAATAGTTTGAGTGAAGAAGAGATGAAGAAGATGCAATGCTTCTCCATG
AAAGACGTTGACATAGATTCGCCGGACTACGTTAATGAGAAAATAGTGAACGTTGGCTTC
GATACCAACGAGAAATATATAGATAGGGTCAATGATTGGAGTGAACGGGATTTAAAACCC
TATTACCTAGACAGTAATGGTATTAATGGCAAGGAATTCGATTTCGACTCTCAGCCAGAT
CTGGAGGGACATCCGGGGCCCAGTCCTAGTGTTATTCTCCAGGCTTTGACGATGTCGAAC
GCCAACGACGGCATCAACTTGGAGAGGTTAGAGACGATAGGTGACAGTTTCCTGAAATTC
GCCATAACAGCGTATTTGTATTGCGCCCTACCCGCGGTGCACGAAGGAAAGCTGTCGCAT
ATGAGAAGCAAACAGGTATTGGAATCTAAGATTTTCGCGAACAAATCGATAGCCGACTGT
GTGGAGGCCTTGATAGGCGCATATCTATTGGAGTGTGGTCCACGAGGCGCTCTCTTATTC
ATGTCCTGGCTCGGTATCACGGTGCTGCCAACTCACACGGTGCCGTTGCCAGATAATCAC
CCGTTTGTAGTCAAAATGGTGAGTTATGTAACGTATTTTACACCCACACATAAAGCTGTG
TTAGTACCCGCCATATGTCTTATAAACTCAATGAGATCTAAGCTTTTTGCGAGTAGTCGT
TTAAATGAAACTAATATTTTCGGATTACTGCGCGTATTTTACTACAGACTTATATTTATT
TTTACAATATTTGATTATAAAAAAAAAAAAATTAAAATTTCCATTTTCTTTTAA
Protein sequence:
MGVRIEYKTAHEAEAVDIERRRPIAPAPQPDALDDARDLKEWGQVLREGTAPEEYVKKFK
NAVLKHEADIKDKGYLIDKDTPIVELLPETTKDLDKTNSEILKVTVKSDSNLMNGDDTST
IEVCDSVHTQTEDVQIKDKIDKDKNTTDFIDDIFPYGNLLEVENGQITLESIERNKRLLL
AEIKNSLSEEEMKKMQCFSMKDVDIDSPDYVNEKIVNVGFDTNEKYIDRVNDWSERDLKP
YYLDSNGINGKEFDFDSQPDLEGHPGPSPSVILQALTMSNANDGINLERLETIGDSFLKF
AITAYLYCALPAVHEGKLSHMRSKQVLESKIFANKSIADCVEALIGAYLLECGPRGALLF
MSWLGITVLPTHTVPLPDNHPFVVKMVSYVTYFTPTHKAVLVPAICLINSMRSKLFASSR
LNETNIFGLLRVFYYRLIFIFTIFDYKKKKIKISIFF