| New model in OGS2.0 | DPOGS211229 |
|---|---|
| Genomic Position | scaffold525:+ 17269-49379 |
| See gene structure | |
| CDS Length | 1446 |
| Paired RNAseq reads | 35 |
| Single RNAseq reads | 119 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003208 (7e-116) |
| Best Drosophila hit | Lim3, isoform A (9e-107) |
| Best Human hit | LIM/homeobox protein Lhx4 (8e-81) |
| Best NR hit (blastp) | lim homeobox protein [Culex quinquefasciatus] (3e-149) |
| Best NR hit (blastx) | lim homeobox protein [Culex quinquefasciatus] (8e-121) |
| GeneOntology terms | GO:0005634 nucleus GO:0003700 sequence-specific DNA binding transcription factor activity GO:0006355 regulation of transcription, DNA-dependent GO:0003704 specific RNA polymerase II transcription factor activity GO:0007399 nervous system development GO:0043565 sequence-specific DNA binding GO:0008270 zinc ion binding GO:0008045 motor axon guidance |
| InterPro families | IPR009057 Homeodomain-like IPR017970 Homeobox, conserved site IPR001781 Zinc finger, LIM-type IPR001356 Homeobox IPR012287 Homeodomain-related |
| Orthology group | MCL11104 |
Nucleotide sequence:
ATGGATGTAAGCATCGGGGGTGTGTCGTACGACTCGGGAAAATTAGTTCGGGGCGGGGGA
GCCCCTCACCCCTATTCCGGGGTTTATCAGATTCAGGGGTTCCGAGTTGAGCGTTCAATA
GCATTTGCAGTCAACGAGAATTTTCCTTGTAATCGATCGCTGGGTGTACCCGACACTAGA
GATTGGTTGAGGGGCGTGGTGGATGTTATCATTAGGGTGACGAGGACCAATCGCATGTTG
GTACTGATAAGGGGGTATGGGTACGCCGGACGCAGCGGCGCAGGGCGGCCGCAGATCATG
CTGGGCTCCATGATGTACCCCGGCGCGGAAGACGAGCTCGACATGCGCGTACCACCCATC
CAACTAGAACACCTACCTGAAGTGTTCCTATCCAGCATACCAAAATGTGGAGGCTGTCAT
GAGATGATAGTAGATCGATACGTGCTAAAAGTGTCAGACAGGACTTGGCACGCTGGCTGT
TTGAGGTGTGTCGAGTGTCGAGCCATGCTGTCAGGAAAGTGCTTCGCTAGAAATAACCAG
CTCTACTGCACCGAAGACTTCTTCAAGCGTTACGGCACTAAGTGCGCGGGCTGCGGGCAG
GGCATCCCGCCGACACAGGTCGTACGGCGGGCCCAGGCTCACGTTTACCATCTACGGTGT
TTCGCATGTGCTGCCTGTGCACGCACACTTAATACCGGAGACGAGTTTTATCTAATGGAG
GATGGCAAGCTTGTTTGCAAACCGGACTATGAAGCTGCGAGAGCGAAAGGTGAAGGTTCG
TTGGATGGAGACGCAGCTAGCAAGAGACCGCGAACTACAATTACTGCAAAACAGCTTGAA
ACTCTTAAAAGTGCTTATAGCAGCAGTCCAAAGCCAGCTCGCCACGTGAGGGAACAGCTT
GCTCAAGATACAGGCTTAGATATGAGGGTCGTTCAAGTTTGGTTTCAAAATCGGAGGGCA
AAAGAGAAGCGACTAAAGAAGGACGCGGGTCGAACAAGATGGTCACAATACTTCAGATCT
ATGAAGGGCGGAGGAAGTGGCTCACCGCGTCACGATCGTCTTCTGGATAAAGACGAACTG
AAAATAGATTTAGACTCTTTCAGTCATCATGAGCTAAGCAACGATAGTTATAGCACTGCT
GCGCTGGGTGGTGAGGAGGGATCACCAGCCGGCGGCGCGGCGGGAGGGACTCGGTTTGGT
ACTACGCCACCATATCTTCGTGCTCATTCACCCCCCCACGCACATTATCATTATCCCCCC
GATCACCTCGTATATACCAATATCGGTCAATCAATGGGTGGCGCTGGTTTAGGCGTGGGG
GCGGGGGGTGCGTCTGATATGAGCAGCTCTTCTTCTCCTGCGGCTGGTGGTTACCCTGAC
TTTCCTCCGTCTCCGGACTCTTGGCTCGGCGAACCACATCACTATTCACCCCGAGGCTAC
CCCTAG
Protein sequence:
MDVSIGGVSYDSGKLVRGGGAPHPYSGVYQIQGFRVERSIAFAVNENFPCNRSLGVPDTR
DWLRGVVDVIIRVTRTNRMLVLIRGYGYAGRSGAGRPQIMLGSMMYPGAEDELDMRVPPI
QLEHLPEVFLSSIPKCGGCHEMIVDRYVLKVSDRTWHAGCLRCVECRAMLSGKCFARNNQ
LYCTEDFFKRYGTKCAGCGQGIPPTQVVRRAQAHVYHLRCFACAACARTLNTGDEFYLME
DGKLVCKPDYEAARAKGEGSLDGDAASKRPRTTITAKQLETLKSAYSSSPKPARHVREQL
AQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGGGSGSPRHDRLLDKDEL
KIDLDSFSHHELSNDSYSTAALGGEEGSPAGGAAGGTRFGTTPPYLRAHSPPHAHYHYPP
DHLVYTNIGQSMGGAGLGVGAGGASDMSSSSSPAAGGYPDFPPSPDSWLGEPHHYSPRGY
P