New model in OGS2.0 | DPOGS200046  |
---|---|
Genomic Position | scaffold1522:+ 5052-11198 |
See gene structure | |
CDS Length | 1581 |
Paired RNAseq reads   | 136 |
Single RNAseq reads   | 577 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013907 (7e-92) |
Best Drosophila hit   | SP2353 (1e-32) |
Best Human hit | basement membrane-specific heparan sulfate proteoglycan core protein precursor (3e-16) |
Best NR hit (blastp)   | laminin gamma-3 chain, putative [Pediculus humanus corporis] (7e-36) |
Best NR hit (blastx)   | laminin gamma-3 chain, putative [Pediculus humanus corporis] (3e-34) |
GeneOntology terms    | GO:0001525 angiogenesis GO:0005576 extracellular region GO:0008022 protein C-terminus binding GO:0005615 extracellular space GO:0005604 basement membrane GO:0005515 protein binding GO:0031012 extracellular matrix GO:0007155 cell adhesion |
InterPro families    | IPR008985 Concanavalin A-like lectin/glucanase IPR001791 Laminin G domain IPR013320 Concanavalin A-like lectin/glucanase, subgroup IPR012679 Laminin G, subdomain 1 |
Orthology group | MCL10886 |
Nucleotide sequence:
GTGCCACGCTTCAACGGTTCGTCGTACTTACGATTGCCCGGCCTGGGAAACACAGCGCAA
TCTTGGCTGGATATTCGGATAACCGTAAAACCGACTAGCGGTGATGGGCTTCTGTTGTAT
GACGCGGAACACCCCAGCGGCGATGGTGACTTCTTCTCCCTTCATCTTCGTGATTTTTTC
GTCGAATTCGCCTTCGATCTTGGATCAGGGATCGCTCTTGTGAGATCCGCCTACCCGCTG
TCACCAAACAAGTGGCATAGCATATCAATAAGCCGTACGGGTCGTCACGCGTCGATCCGC
GTTAGATCTTACGACACGAGCGACGTGACGGATACGACGCGATCGGTGACGTCACGCGGC
GCCGCGAGGAGACTCACCCTCACCCAGCCGATGTTGCTAGGAGGCGCGCCCTACCCGTTG
CCACAGAGACTCGCCTTGAAAACCTCCTTCAGTGGCTGCGTGGGCAAGTTGGTGATCAAC
GAGGAGGAGTTGTCTGTAGTTTCCGCTGCTCTCGGCGGCGTTGATGTCGACAACTGTGAC
GCGCCTCACAACACGTGCACGGACTGCAAAGAGACGTTATACCAAACACCAGAATACCCA
CGCGAGCTATCAGCCATCCACCACTCTATAGTCGCGAAAAAGGGATTCAAAATCAAAAAT
CACAAAACCAAAACTAAAAAACATCACGAGAAAAAGAAATATCCTAAGAAGTACGTACAA
AATGGCGTGCATATGCAGAACGATATAGACAAGGGTGTTACGGAACAGCCTTACGACGGA
CGGACATACATGCAAGTGAAATACCTAGACTCCAACGAGATCAACTGGGGGGACACGAAC
ACCTACCCGAGTTTCACGGGAACTGATAGCTTTATACATATAGATGACGAAGAGACTATG
AAAAGGTTGCTGAGCTACACCCTGGACATCAACATCCGTTTCCGTTCCGTGTCCTCCAAC
GGTCTGTTAGTGTGGAGCGGTCGGGTCACACACACACACACAGAGAACAATATGAACACG
AACACACACACAAGCGACTTCCTTTCATTGGCTGTGGAAAACTCCGTGCTTGTATTCAGA
GGATATTTGTGCATTGGTATCAAGACCAGACATATTTATGTATTCGGGATTTTAAAGCGC
GTTGTGATGATAGAGCTTACGATTCCTTGGGAAACCAACATCCCTAAAGACCATACCATC
AAGGTCAACAAATATTACGAGCTCACAAACGAACTCACTCGAAATAGGTTCGTCGTGGAT
TTGTACGCGGTAGAAGTGGGAGCGAGAGGTATAACGGCTAAATCTCTCTACAACCTACTA
AAAGACTTAGGCCTGTCCAGAACTCACATCAATTCGTTCTTGGAACGTACTTCGAAGGCA
GCCCTAGTAGGTTCTTTTCAAATATGGTTAGGTAGGGAGAGGAGCTTGGACAGTGGAGCT
ATGCATGAGGCGTTCCAGTATGAATTGAACCGTCTACGTTTATTAACGGCTCAGACCCTC
TTGGAGGCGTATAGGAAGTCGGATAACTTCGTTGGAACCGGCAATATGGAACCCATAAGA
TTATCCGCCGAGGTCAGATGA
Protein sequence:
VPRFNGSSYLRLPGLGNTAQSWLDIRITVKPTSGDGLLLYDAEHPSGDGDFFSLHLRDFF
VEFAFDLGSGIALVRSAYPLSPNKWHSISISRTGRHASIRVRSYDTSDVTDTTRSVTSRG
AARRLTLTQPMLLGGAPYPLPQRLALKTSFSGCVGKLVINEEELSVVSAALGGVDVDNCD
APHNTCTDCKETLYQTPEYPRELSAIHHSIVAKKGFKIKNHKTKTKKHHEKKKYPKKYVQ
NGVHMQNDIDKGVTEQPYDGRTYMQVKYLDSNEINWGDTNTYPSFTGTDSFIHIDDEETM
KRLLSYTLDINIRFRSVSSNGLLVWSGRVTHTHTENNMNTNTHTSDFLSLAVENSVLVFR
GYLCIGIKTRHIYVFGILKRVVMIELTIPWETNIPKDHTIKVNKYYELTNELTRNRFVVD
LYAVEVGARGITAKSLYNLLKDLGLSRTHINSFLERTSKAALVGSFQIWLGRERSLDSGA
MHEAFQYELNRLRLLTAQTLLEAYRKSDNFVGTGNMEPIRLSAEVR