| New model in OGS2.0 | DPOGS208174 |
|---|---|
| Genomic Position | scaffold9351:- 1003-2209 |
| See gene structure | |
| CDS Length | 672 |
| Paired RNAseq reads | 51 |
| Single RNAseq reads | 196 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010261 (1e-50) |
| Best Drosophila hit | Msh6 (4e-07) |
| Best Human hit | DNA mismatch repair protein Msh6 (9e-10) |
| Best NR hit (blastp) | PREDICTED: similar to DNA mismatch repair protein muts [Tribolium castaneum] (2e-13) |
| Best NR hit (blastx) | DNA mismatch repair protein MSH6 [Culex quinquefasciatus] (3e-18) |
| GeneOntology terms | GO:0030983 mismatched DNA binding GO:0008629 induction of apoptosis by intracellular signals GO:0045910 negative regulation of DNA recombination GO:0016446 somatic hypermutation of immunoglobulin genes GO:0016447 somatic recombination of immunoglobulin gene segments GO:0032137 guanine/thymine mispair binding GO:0032301 MutSalpha complex GO:0008630 DNA damage response, signal transduction resulting in induction of apoptosis GO:0045190 isotype switching GO:0000790 nuclear chromatin GO:0006974 response to DNA damage stimulus GO:0000166 nucleotide binding GO:0005524 ATP binding GO:0006281 DNA repair GO:0003677 DNA binding GO:0003684 damaged DNA binding GO:0008340 determination of adult lifespan GO:0006298 mismatch repair GO:0009411 response to UV GO:0003682 chromatin binding |
| InterPro families | IPR015536 DNA mismatch repair protein MutS-homologue MSH6 |
| Orthology group | ND |
Nucleotide sequence:
ATGTCAAAACGTAATTCAAATCCTGGTGCGAATACACTCTTCAATTATTTTACTAAAACT
CCGCCTTGCAATAAAAAACTAAAACCAAGTGAGGATTCTGAAGCCGATAATGTTTTAAAT
TCCCCCGTGAGCAGTAAAAAAGGGAATAAAACTGAAAGCAAGAAGCGAGAAAGACAAGCG
ACACCTTCACCCGATCCGAGAAAGAGTGATAGTGAAGACGACGTTCCAGTTGTTGTTAAA
AAGAGGAAAAGAATTAGACTTAATCCAGTTGACTCCGATGACTCTGATATTGAAAACAAA
GATAATAAGATTGGTTCACCAGAGGATAAAGTTTCTTTATCCACCAGGAAGTTGCAGGAT
AATTTCACTTTTGGATCTCCTAAGAGTGCATCACCTAAAGTCACCAAGACTAAAAAAAAT
CCAAATGAAGCTCAGCCCACCATCAAAGAAGAACCAACGTCCCAATACACAGAGGATGGT
AACTGGGTTCATTGTAAACTGGATTGGCTGAAACCGGAGAAAATCAGAGATGCTACGAAA
AGGAAACCAGATCATCCCGACTATGATCCCAGCACTTTATATGTTCCGCCGGACTTTATG
AAGAGTCAGACACCAGTGAGTACATATAAAAAATATATTAATATCATTAATATTAAGAAA
ATGCTTAAATAA
Protein sequence:
MSKRNSNPGANTLFNYFTKTPPCNKKLKPSEDSEADNVLNSPVSSKKGNKTESKKRERQA
TPSPDPRKSDSEDDVPVVVKKRKRIRLNPVDSDDSDIENKDNKIGSPEDKVSLSTRKLQD
NFTFGSPKSASPKVTKTKKNPNEAQPTIKEEPTSQYTEDGNWVHCKLDWLKPEKIRDATK
RKPDHPDYDPSTLYVPPDFMKSQTPVSTYKKYINIINIKKMLK