| New model in OGS2.0 | DPOGS210327 |
|---|---|
| Genomic Position | scaffold160:- 307156-313589 |
| See gene structure | |
| CDS Length | 1359 |
| Paired RNAseq reads | 1590 |
| Single RNAseq reads | 4218 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011965 (0.0) |
| Best Drosophila hit | CG10077, isoform A (5e-168) |
| Best Human hit | probable ATP-dependent RNA helicase DDX17 isoform 3 (2e-150) |
| Best NR hit (blastp) | PREDICTED: similar to GH10652p [Nasonia vitripennis] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to CG10077-PA, isoform A, partial [Apis mellifera] (3e-178) |
| GeneOntology terms | GO:0003724 RNA helicase activity GO:0003676 nucleic acid binding GO:0005524 ATP binding GO:0008026 ATP-dependent helicase activity GO:0005875 microtubule associated complex |
| InterPro families | IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL10086 |
Nucleotide sequence:
ATGCGTTCCCAGGCTGAAGTGGAAGCATACCGTAGTCAACATCAGATTACGGTCAAGGGG
AGGGATGTTCCTGCACCCAGTATGTTTTTTGATGAAGGTGGCTTTCCTGATTATGCCATG
AAGGAAATACTTAAACAAGGCTTCCCTAATCCGACTCCAATTCAGGCTCAAGGATGGCCA
ATTGCTCTGTCCGGGCGGGACATGGTCGGAATTGCTCAAACAGGCTCCGGAAAAACCCTA
GCATATATTCTGCCAGCTATTGTACACATTATAAATCAGCCTCGGCTCCTGAGAGACGAA
GGACCCATAGTCCTCGTTTTAGCTCCAACTAGAGAGCTGGCCCAGCAAATACAAACGGTG
GCAAATGAATTTGGTCAGAGCGTTCAAGTACGGAACACGTGTATATTTGGCGGGGCTCCC
AAGGGCCCTCAAGGGCGCACACTGGAAAGAGGTGTTGAAATTGTCATCGCTACCCCCGGG
AGACTTATAGACTTCCTTGAGAAGGACACAACAAACCTCCGTCGCTGCACCTACTTGGTA
CTTGATGAGGCAGACAGGATGTTGGACATGGGTTTTGAACCTCAGATTAGGAAGATCATT
GAACAGATACGACCTGATCGGCAGGTCCTAATGTGGTCGGCAACTTGGCCCAAGGAGGTG
CAGAATTTAGCGGAGGAGTTCCTACATGATTACATCCAGATCAACATTGGGTCGCTGTCG
CTGTCTGCCAACCACAACATCCTGCAGATAGTGGACGTTTGCGAGGAGTGGGAGAAGAAC
GACAAACTGCTCACTCTACTCACTGAAATATCATCGGAGGAGGAAACCAAGACCATCATC
TTTGCTGAGACGAAACGGAAGGTGGATGACATAACCAAGAGCATAAACCGTGCCGGCTGG
CGCGCCCTCTCCATACACGGGGACAAGAACCAGCAGGACAGGGACTACGTGCTGGCGCAG
TTCCGCTCTTCCAGGACCGCCATACTGGTCGCCACCGACGTGGCGGCGAGAGGACTCGAC
GTGGAAGACGTGAAGTTCGTCATCAATTACGACTATCCCAACAACTCTGAGGACTACGTG
CATCGCATCGGCAGGACCGGCAGGTCTCACAACACGGGGACAGCCTACACGCTCTTCACA
CCGAACAATTCCGCTAAGGCCAAAGACCTGCTGTCAGTCCTACAAGAAGCGAATCAAGTT
GTCAATCCAAAGCTCTTAGAGTTGGCGCAGTGCGGGATGGGATTCAAGGGAAAATATGGT
CGCGGCAGGTTCCGCGAGCGCGACGACAGCGGGGGTCGCGGTAGGGGCGGTCGAGGGGGA
GGGCGGTACACGGGAGACAGAGGTGAGAAAATATATTAG
Protein sequence:
MRSQAEVEAYRSQHQITVKGRDVPAPSMFFDEGGFPDYAMKEILKQGFPNPTPIQAQGWP
IALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLRDEGPIVLVLAPTRELAQQIQTV
ANEFGQSVQVRNTCIFGGAPKGPQGRTLERGVEIVIATPGRLIDFLEKDTTNLRRCTYLV
LDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVQNLAEEFLHDYIQINIGSLS
LSANHNILQIVDVCEEWEKNDKLLTLLTEISSEEETKTIIFAETKRKVDDITKSINRAGW
RALSIHGDKNQQDRDYVLAQFRSSRTAILVATDVAARGLDVEDVKFVINYDYPNNSEDYV
HRIGRTGRSHNTGTAYTLFTPNNSAKAKDLLSVLQEANQVVNPKLLELAQCGMGFKGKYG
RGRFRERDDSGGRGRGGRGGGRYTGDRGEKIY