New model in OGS2.0 | DPOGS210329  |
---|---|
Genomic Position | scaffold160:- 275358-280739 |
See gene structure | |
CDS Length | 1617 |
Paired RNAseq reads   | 719 |
Single RNAseq reads   | 1722 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011966 (0.0) |
Best Drosophila hit   | CG6550 (0.0) |
Best Human hit | CDK5 regulatory subunit-associated protein 1-like 1 (0.0) |
Best NR hit (blastp)   | hypothetical protein TcasGA2_TC011523 [Tribolium castaneum] (0.0) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC011523 [Tribolium castaneum] (0.0) |
GeneOntology terms    | GO:0005575 cellular_component GO:0003824 catalytic activity GO:0051539 4 iron, 4 sulfur cluster binding GO:0009451 RNA modification |
InterPro families    | IPR020612 Methylthiotransferase, conserved site IPR006638 Elongator protein 3/MiaB/NifB IPR023404 Radical SAM, alpha/beta horseshoe IPR002792 Deoxyribonuclease/rho motif-related TRAM IPR013848 Methylthiotransferase, N-terminal IPR007197 Radical SAM IPR005839 Methylthiotransferase IPR006466 MiaB-like tRNA modifying enzyme, archaeal-type |
Orthology group | MCL14131 |
Nucleotide sequence:
ATGCCAGGTGCCGTATCGGAGTTTATTGATGATATTGAGGATTTAATATCTTCACAGGAT
ATCACACCAAAAGAAAGATACGCCAGTAGGAAAAGTGTAAGCGTCCGGTCAAAAAAGAAA
GAAAAAAAGGAGACGGAATGTGTTGAGAAGGTTATTTTGGAGAGTGTTGTACCAGGAACT
CAAACAATTTACGTGAAGACATGGGGCTGTGCACACAACAACTCGGATTCAGAGTATATG
GCAGGTCTACTGGCTGCACATGGCTACAAACTGACGGAAGACAAGTTTTCTGCACAGCTA
TGGCTGCTGAACTCTTGTACTGTGAAGAGCCCTGCTGAAGACCATTTTAAGAATGAGATT
GAACTGGCTCAGAAGCGCGGTATCCACTTGGTGTTAGCCGGATGTGTGCCGCAGGGAGCA
CCACGCTCGGGATATCTTGCGGGACTGAGTGTGGTCGGAGTACACCAGATTGATAGAATC
GTTGAGATCGTTGAGGAAACATTGAAAGGTCACACAGTGCGTCTTTTTGGTCAAAAGAAA
ACGGAGGAGGGTCGGAAGGCGGGCGGGGCTTCTTTGTTGCTCCCGAAAGTGAGGAAAAAT
CCCCTCATAGAGATCATACCGATAAATACAGGGTGTTTGAACCAGTGTACATACTGTAAA
ACGAAACACGCGAGGGGCGAGCTGGGGAGTTATCCTCCAGAGGAAATAGTCGAGAGGGCG
ACACAGTCTTTCAAGGAGGGAGTGTGCGAAATATGGCTGACTAGCGAAGACACGGGAACA
TACGGTCGGGACATAGGCACGTCCCTCCCATACCTCCTCAAACAGCTGGTGGCCGTCATT
CCTGAGGGCTGTCGTCTTCGCCTGGGTATGACGAACCCGCCCTATATCCTGGAGCACCTG
GCCGAGGTCGCCGAGATCATGCACCATCCCAGGGTATATAAGTTCCTCCACGTGCCGGTT
CAGTCCGGGAGTGACCAGGTGTTGGCCGACATGAAGAGGGAGTACTCCAGGAAGGACTTC
GAGAGGGTCGTGGACTACCTCGCAGAGAGGGTCCCCGGGATCACGATAGCCACGGACATC
ATCTGCGGGTTCCCGACGGAGACGGACGCGGACTTCGAGGATACCATGCAGCTCTGTATG
AAGTATCGCTTCTCATCGCTCTTCATCAACCAGTTCTTCCCTCGCCCGGGCACGCCGGCC
GCTAACATGACACGAGTCCCGCCTCAAGACGTCAAGAAAAGGACGAAGAAATTATCGGAA
TTCTTCCGCTCGTATGAACCTTACGGTCACAAGGTGGGCGAGATACAGGAGGTTCTGGTG
ACGGATGTGTCCCACGACAAAAACTATTACGTGGCACACAACGAGTTCTACGAACAGGTG
CTGGTGCCCAAGGAGGAGAGATACATGGGGAAGCTGGTTACGGTCAGAATAACGAGCGCC
TCGAAGTTCTCCATGATGGGACACCCTGTAGATAAACCCAAAATGCCCGGCTTAGTGAAA
CCGTTGAAGAAAGGGGAAGTGTCGGGTTATTGGAAACAAAGCAAGGCCTCGCTTCCTGTG
CCCATACTTATGTTACTAATAGCCGTCGTCGCACGCTTGTTATGGATGTTTATATAG
Protein sequence:
MPGAVSEFIDDIEDLISSQDITPKERYASRKSVSVRSKKKEKKETECVEKVILESVVPGT
QTIYVKTWGCAHNNSDSEYMAGLLAAHGYKLTEDKFSAQLWLLNSCTVKSPAEDHFKNEI
ELAQKRGIHLVLAGCVPQGAPRSGYLAGLSVVGVHQIDRIVEIVEETLKGHTVRLFGQKK
TEEGRKAGGASLLLPKVRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYPPEEIVERA
TQSFKEGVCEIWLTSEDTGTYGRDIGTSLPYLLKQLVAVIPEGCRLRLGMTNPPYILEHL
AEVAEIMHHPRVYKFLHVPVQSGSDQVLADMKREYSRKDFERVVDYLAERVPGITIATDI
ICGFPTETDADFEDTMQLCMKYRFSSLFINQFFPRPGTPAANMTRVPPQDVKKRTKKLSE
FFRSYEPYGHKVGEIQEVLVTDVSHDKNYYVAHNEFYEQVLVPKEERYMGKLVTVRITSA
SKFSMMGHPVDKPKMPGLVKPLKKGEVSGYWKQSKASLPVPILMLLIAVVARLLWMFI