| New model in OGS2.0 | DPOGS210363 |
|---|---|
| Genomic Position | scaffold160:+ 111924-113040 |
| See gene structure | |
| CDS Length | 864 |
| Paired RNAseq reads | 298 |
| Single RNAseq reads | 821 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011920 (5e-105) |
| Best Drosophila hit | clipper (5e-77) |
| Best Human hit | cleavage and polyadenylation specificity factor subunit 4 isoform 1 (2e-72) |
| Best NR hit (blastp) | cleavage and polyadenylation specific factor 4 [Bombyx mori] (5e-147) |
| Best NR hit (blastx) | cleavage and polyadenylation specific factor 4 [Bombyx mori] (6e-134) |
| GeneOntology terms | GO:0004521 endoribonuclease activity GO:0005847 mRNA cleavage and polyadenylation specificity factor complex GO:0006379 mRNA cleavage GO:0006378 mRNA polyadenylation GO:0003676 nucleic acid binding GO:0008270 zinc ion binding |
| InterPro families | IPR000571 Zinc finger, CCCH-type IPR001878 Zinc finger, CCHC-type IPR013084 Zinc finger, CCHC retroviral-type |
| Orthology group | MCL12297 |
Nucleotide sequence:
ATGGAAGTTATAGTGGCAAACGTGGATCATATAAAATTTGACATCGATTATGCTTTAGAG
CAGCAGTATGGAGCCCTGCCTTTGCCCTTTCCTGGAATGGATAAATCTACTGCAGCAGTC
TGCGAATTCTACAGCCAACCCGGGGGATGTGGTAATGGACCTCAGTGCCCTTATCGTCAT
GTGAGGGGAGACCGAACAGTAGTATGTAAGCATTGGCTGAGAGGTCTCTGCAAGAAAGGC
GACCAGTGTGAATTTCTACACGAATATGACATGACCAAAATGCCTGAGTGCTATTTTTAT
GCTAGATTCAACGCTTGCCACAATAAGGAGTGTCCATTTCTTCATATAGATCCAGAAAGC
AAAATTAAAGATTGTCCATGGTATGATCGTGGGTTTTGTAGACATGGTCCACATTGTAGA
CATCGCCATGTCAGAAGAGTTCTCTGTATAAATTACTTGGCAGGCTTCTGCCCTGATGGT
GCAAACTGCAAGTACATGCACCCACGGTTTGAATTACCAGCTCCTCCAGAACAGACAAAG
GATGCTAAAAGACTTCCCGTCTGCCACTACTGTTCAGAAGTAGGACATAAGGCTTCCACT
TGTCATAAGATTCCTCCTGATCAAAGAGAAGTCGCCCAAAAACAGGAGGAGGCACGTTAT
AGAGCCTTGGGCTATGTCAAGCCTGCTGTAGATGGTGAAGAACTGAGATTACAAAGACTG
ATCCACAAACCTTTAGAGGAAGTGACTTGTTTCAAGTGCGGTACAAAGGGACATTATGCC
AACAAGTGCCCCAAAGGTCACCTGGCCTTCCTATCAAATCAACCCCCTCCCGGCAACCCA
AATGTGTTTAAAAAACCTAACTAG
Protein sequence:
MEVIVANVDHIKFDIDYALEQQYGALPLPFPGMDKSTAAVCEFYSQPGGCGNGPQCPYRH
VRGDRTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYARFNACHNKECPFLHIDPES
KIKDCPWYDRGFCRHGPHCRHRHVRRVLCINYLAGFCPDGANCKYMHPRFELPAPPEQTK
DAKRLPVCHYCSEVGHKASTCHKIPPDQREVAQKQEEARYRALGYVKPAVDGEELRLQRL
IHKPLEEVTCFKCGTKGHYANKCPKGHLAFLSNQPPPGNPNVFKKPN