| New model in OGS2.0 | DPOGS210364 |
|---|---|
| Genomic Position | scaffold160:+ 117417-118706 |
| See gene structure | |
| CDS Length | 1290 |
| Paired RNAseq reads | 177 |
| Single RNAseq reads | 488 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011921 (1e-128) |
| Best Drosophila hit | CG42257, isoform H (3e-31) |
| Best Human hit | RNA-binding protein 40 (2e-29) |
| Best NR hit (blastp) | PREDICTED: similar to RNA-binding protein 40 (RNA-binding motif protein 40) (RNA-binding region-containing protein 3) [Acyrthosiphon pisum] (3e-69) |
| Best NR hit (blastx) | PREDICTED: similar to RNA-binding region (RNP1, RRM) containing 3 [Tribolium castaneum] (1e-69) |
| GeneOntology terms | GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0005575 cellular_component GO:0008150 biological_process |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL14233 |
Nucleotide sequence:
ATGTCTGCGGTCTTAATTATAAAACACCTGCCACCAAACTTATCTTTCCAAGATAAGGAA
AAGTTATTGCATCATTTCGGAGCTGAGAAGGTATGGGGACCCGAGAAAAGAGATTATGTG
TTTGCTTCGTTTTCTACTAAAGAAAAAGCAAAAATATCTTTGCAGCGTCTCCATCAACTG
GAAATAGCTAATAGACGTTTAGTCGTTGAATATTCGTTCGAAAAAGAACCGACGCTACAG
ACAAAACAGAATGAAGACTCAGTTTCAGACACCACAAAACATATAAGAGAGTTCTTGCGG
ACTCTTAACGCTTGGAATCCTTCTGTGGATTTTTACCAACCACCACCAATACATCTTAAA
TATAAATATCCTACAGCAAATTCTGTAGTATGTATAAATATTTTGTATTCACTCCTTCTA
CATAAACCGTTTTACATTCAAACATTACATCTCATGAACAAAATGAGCTTAGAGCCACCC
TTTGAAGAAAATGAAAAAGCTTTAAATTATTTTAAGGAGACTTTTAGGGAATATTTTCTG
GATGAGATTTATATTACTGCCCCTAATGAACCCAGCGAGTCAGAAATATCCAGTGATGAT
AATACAGTGCAGCCAAAGGAACATTTACCTTCAATGGTGAAAAGGAAGCATTTGCTGCCT
AAGACAAGGAAACGGGCTGCAGCAGTGTTGTCGACAGCCAATCTACCGATGTCTAAAAGA
GAAAAACCTACAAACCAGGAAGATGTGTTTGAAGTCGTCGCTCCTGTTGCTGAAGCCAAA
AAAATATCATTGGTTGTGTCACATGATGCTCTACAGAAGCAGACTGAAATCCCTGAAGTA
GTGGGTGAGTTGGGAAAGTTTCAGAAGGAAGAACAAAGCTCAGTTCAAGAAGAGAAAGTT
GAGGAACCCGATAAACCATCAATAACAAAAAAGGAAATTTTGAAGAATAGACTATCTTAC
AGGGAAATGAAGGGGTTACCAGTTTTCAAAAACTATCATCCTGGGGAACCATCTATGAGA
CTATACATAAAAAATCTGGCAAAAAACGTAACAGAACAAGATGTACAAAGAATCTATAAA
AGATACATGGAAGACATCCCTGAAGAGGAGCGGGTTGGATTTGATGTAAGGGTCATGCAA
GAGGGACGAATGAAGGGACAGGCTTTTGTTACGTTTCCATCAATAAAGTTGGCAGAACAG
GCTCTCAGTGAAACAAATGGGTTCATATTGAATGACAAACCGATGGTTGTACAATTTGCT
AGGGCTGCTATTAAAAAAACTGTTGAATAA
Protein sequence:
MSAVLIIKHLPPNLSFQDKEKLLHHFGAEKVWGPEKRDYVFASFSTKEKAKISLQRLHQL
EIANRRLVVEYSFEKEPTLQTKQNEDSVSDTTKHIREFLRTLNAWNPSVDFYQPPPIHLK
YKYPTANSVVCINILYSLLLHKPFYIQTLHLMNKMSLEPPFEENEKALNYFKETFREYFL
DEIYITAPNEPSESEISSDDNTVQPKEHLPSMVKRKHLLPKTRKRAAAVLSTANLPMSKR
EKPTNQEDVFEVVAPVAEAKKISLVVSHDALQKQTEIPEVVGELGKFQKEEQSSVQEEKV
EEPDKPSITKKEILKNRLSYREMKGLPVFKNYHPGEPSMRLYIKNLAKNVTEQDVQRIYK
RYMEDIPEEERVGFDVRVMQEGRMKGQAFVTFPSIKLAEQALSETNGFILNDKPMVVQFA
RAAIKKTVE