| New model in OGS2.0 | DPOGS210369 |
|---|---|
| Genomic Position | scaffold160:+ 231878-237019 |
| See gene structure | |
| CDS Length | 699 |
| Paired RNAseq reads | 60 |
| Single RNAseq reads | 384 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011931 (2e-87) |
| Best Drosophila hit | Netrin-B, isoform B (9e-49) |
| Best Human hit | netrin-1 precursor (6e-55) |
| Best NR hit (blastp) | PREDICTED: similar to netrin [Acyrthosiphon pisum] (1e-84) |
| Best NR hit (blastx) | PREDICTED: similar to netrin [Tribolium castaneum] (4e-75) |
| GeneOntology terms | GO:0005604 basement membrane GO:0005737 cytoplasm GO:0030334 regulation of cell migration GO:0016337 cell-cell adhesion GO:0045773 positive regulation of axon extension GO:0005515 protein binding GO:0005576 extracellular region GO:0007411 axon guidance GO:0008284 positive regulation of cell proliferation GO:0006915 apoptosis GO:0060603 mammary gland duct morphogenesis GO:0001764 neuron migration GO:0030517 negative regulation of axon extension GO:0030879 mammary gland development GO:0040023 establishment of nucleus localization |
| InterPro families | IPR008993 Tissue inhibitor of metalloproteinases-like, OB-fold IPR002049 EGF-like, laminin IPR018933 Netrin module, non-TIMP type IPR001134 Netrin domain |
| Orthology group | MCL19684 |
Nucleotide sequence:
ATGGAGTTATACAAGTTATCAGGTCGAGCGAGCGGTGGGGTCTGTCTCAAGTGTCGACAT
TACACAGCGGGTCGACACTGCCACTACTGTCGCGAGGGTTACTACAGAGACCCCACTAAA
CCCATCACTCACAAGAAGGCTTGCAAACCTTGTGACTGTCACCCGGTGGGCGCCAGCGGT
AAGACCTGTAACCAGACGAGCGGCCAGTGTCCCTGCAAGGATGGCGTCACAGGAACCACC
TGCAACCGCTGTGCCAAGGGGTACCAGCAGTCTAGGAGCCACATTGCACCTTGCATACCG
GAGCAGTGCGGGCGATGCCGCGCCGGCGCACGCACGCTAAATCTGAACAAGTTCTGCAGC
CGAGACTACGTCATAATGGGGCGCGTGACTGGTCGCGAGGGGGGCGGCGGCGGATGGGCC
CGCCTGGCTCTGTCCGTTCAGGCCGTGTACAAGCGCGGTCCGCGAAGTCGCCTGCGCCGC
GGAGGCCTACCCCTCTACGTTCGCGCCGGAGACCTGGCCTGCCGGTGCCCCAAGATCAAG
ATCAATAAGTCCTATTTAATCCTAGGAGTGGAAAAAGAAGGTGCATCGTCTGGTTTGCCG
GGACTGACGGTAGGGGATAGAACATTAATACTAGAATGGCGAGACGATTGGCACAGACGC
ATCCGACGCCTGCAGCGGCGAGCGATCAACTGCCATTAG
Protein sequence:
MELYKLSGRASGGVCLKCRHYTAGRHCHYCREGYYRDPTKPITHKKACKPCDCHPVGASG
KTCNQTSGQCPCKDGVTGTTCNRCAKGYQQSRSHIAPCIPEQCGRCRAGARTLNLNKFCS
RDYVIMGRVTGREGGGGGWARLALSVQAVYKRGPRSRLRRGGLPLYVRAGDLACRCPKIK
INKSYLILGVEKEGASSGLPGLTVGDRTLILEWRDDWHRRIRRLQRRAINCH