| New model in OGS2.0 | DPOGS207169 |
|---|---|
| Genomic Position | scaffold7:- 840836-853226 |
| See gene structure | |
| CDS Length | 2364 |
| Paired RNAseq reads | 2246 |
| Single RNAseq reads | 5604 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000626 (1e-164) |
| Best Drosophila hit | Rrp6 (7e-104) |
| Best Human hit | exosome component 10 isoform 2 (1e-88) |
| Best NR hit (blastp) | PM-Scl autoantigen-like protein [Bombyx mori] (3e-147) |
| Best NR hit (blastx) | PM-Scl autoantigen-like protein [Bombyx mori] (4e-144) |
| GeneOntology terms | GO:0000176 nuclear exosome (RNase complex) GO:0008408 3'-5' exonuclease activity GO:0003676 nucleic acid binding GO:0005730 nucleolus GO:0005652 nuclear lamina GO:0005634 nucleus GO:0006378 mRNA polyadenylation |
| InterPro families | IPR002562 3'-5' exonuclease IPR002121 Helicase/RNase D C-terminal, HRDC domain IPR012337 Ribonuclease H-like IPR010997 HRDC-like |
| Orthology group | MCL10529 |
Nucleotide sequence:
ATGAATTCAGTTTTAAATCCAGAAGCTCCAGAATTTTACCCTCATTTAACAGCAGTAACA
GAGGATGGCTATACAAAAGTGAATAAAACAATAAGATCCTCAAACTACCTACCAGTGGGG
ACTTCTCTGGAAATATTCAAGACCTTTCATGATTTTAACATAGTGTCGAGTCAAATGACA
AAGAATTTAATTTTACAATCAAACGACATAATGAACACAGAAATACCTAATGTGAAGTTG
AAAATAAATGACGACGAATACAACACAGACCACGTGATTGACGTCAACGATCGCATCCTA
GATCGTATCAACATAAACATAGAAAATGTTTGCCGTGGAGAGGAACCGGGACCTTCATTC
AGCTCCCCAGTGATAACTAAGATACAGGTCGGCTCGACTATGTTTTTTGGAGCAAAGAAT
ATTGCGCGTCCTCAGCTCTCGTTTAAAGAGCCAGTCGACAATTCTGACAATTTATGGGTT
CCCAAAATATCCGACAAACCGAACAATATCAAGCCGCTAGCGTTGAACATACTGTATAAT
GACGAGGGGGAAGCTGTTGGATACGAGCATCCTTACAAAATAGAGCTGGAGTTGTATCAA
CCACCGACTAAAGTGCTAGAGCCCGACACCGAACCGCCGACTTTTCCGAAATCTCTTGAA
GATACTCCACTGTCATTCATAGAAACAGTTGCAGATTTGGAAAAACTTGTAGAGCATCTG
AACACAGTTGACGAGATAGCTGTAGACGTGGAACATCATTCCTATAGGACATATCAAGGC
ATCACATGTCTGATCCAGATATCGACATACGAGGGCGACTTCATAATCGACACGTTGGCC
GTTAGAGAGCACGTCCACAAATTAAATCTGGCATTTACAGACCCAAAGAAGTTAAAAGTA
TTCCATGGCGCTGAACGTGACATAGTATGGCTGCAGCGTGATTTCGGTGTGTATGTGGTC
GGTATGATTGACACTCACCAGGCAGCTAGAGCTTTAGCTCTGCCAGGGTTGTCACTGAAG
AGTCTATTGATGAGGTACTGCAGAGTGGACGCTGATAAAAGATATCAGCTCGCCGATTGG
CGTATACGACCCCTACCGGACGAACTCCGCCAATACGCCCGAGTTGATACACACTATTTG
TTGTACATGTGGCGACGTATGAAAGCTGATTTATTGGCAATCTCGTCAGACGGCAGTCTG
CTGCGGTCTGTTTTTGAGAACAGTAGACATATCTGCTCGTTGACTTATAACAAGGAGGTT
ATAAATGAAAGCAGTCATCTGAAGTTGTACGTGAGGTCGAAGAAGTCTTTCAATACGAGA
CAGATGGCAGCTCTAAGGTTGTTGTACCGCTGGAGGGATGCAAATGCTCGTGAGTTGGAT
GAGAGCACCACGTATCTCCTGCCGAACCATATGCTACTGGCCCTGGCGGAGACGCTGCCA
CGTGAGCTTCAAGGTGTCAGTGCACTTTGCAACCCAATGCCGCCGTTCCTCAAACAGAAC
CTCATCACTGTACATCGGATGCTTCTGTCGTGTCGAGAGTTACCCCTGGAGCCGGTGCTG
TATTCCAGTTCATCTGGTGTCAGCATCGCGATGGCGCCAGCTCCTCAACGTATGATACAT
GACCTGAGCCATCTTCACTACCAGGAGGGTGAAACTTACCCAGAGGTAGACGCGACCTTC
GTGGAGCCCGACCTGCCAGTGTTCCAGCCTAACGACGCGCCCATAGTATCCGATCTGAAT
GTGGACGCCAAGATGTTCATTCCGCCTTACGATAGATACAGGAAGTATCGAGCTCTTGCA
CAGGTGGAAGAGATCAAGGAATATAAAGACAAAGAAGCAAAAATTGCCGCAATATCTAAA
GGTAACGAGTTGATAAAGACAGAAGTTTTGTTGAAGTTGCAAGAGGCAAAGTCCATGATA
GAAAACGAGGGGAAGGGAGATTTGAAGAAAAAGGCTGAGGTGCCCCTAGAGGAATCGACC
ATCAAACTATACGATAGCAGAAGTGGTGGAACAAGTGACGGGAATACAATCGAACGAGGT
CGGGATAGGTCCCAAGAGGGTGATGAAATATCTAGAGGAAAAAATGACGGAAGACCTGAC
GTCTCTAATCAAAACTCAGCACAACGCAAGAGGAAAATGTCGAACGCTGAAAAGGCCGAG
GAGAAGAAACGAGAAATTGGCAACGAGAAGACTTCGTCTCAGAACAAAGGTGACAAAACG
AAGAACAAAAACAAAGTTAAGAACCAATCAGAACAAACTAGCGTTAAACCGTACAATTAT
AAGAAAGTGAATTACAAGAAGTTCCACGACGAAGTCGAAAGAACGCACAAGCAACCTAAG
TCCAAGTTCAAAAAACATAAATAA
Protein sequence:
MNSVLNPEAPEFYPHLTAVTEDGYTKVNKTIRSSNYLPVGTSLEIFKTFHDFNIVSSQMT
KNLILQSNDIMNTEIPNVKLKINDDEYNTDHVIDVNDRILDRININIENVCRGEEPGPSF
SSPVITKIQVGSTMFFGAKNIARPQLSFKEPVDNSDNLWVPKISDKPNNIKPLALNILYN
DEGEAVGYEHPYKIELELYQPPTKVLEPDTEPPTFPKSLEDTPLSFIETVADLEKLVEHL
NTVDEIAVDVEHHSYRTYQGITCLIQISTYEGDFIIDTLAVREHVHKLNLAFTDPKKLKV
FHGAERDIVWLQRDFGVYVVGMIDTHQAARALALPGLSLKSLLMRYCRVDADKRYQLADW
RIRPLPDELRQYARVDTHYLLYMWRRMKADLLAISSDGSLLRSVFENSRHICSLTYNKEV
INESSHLKLYVRSKKSFNTRQMAALRLLYRWRDANARELDESTTYLLPNHMLLALAETLP
RELQGVSALCNPMPPFLKQNLITVHRMLLSCRELPLEPVLYSSSSGVSIAMAPAPQRMIH
DLSHLHYQEGETYPEVDATFVEPDLPVFQPNDAPIVSDLNVDAKMFIPPYDRYRKYRALA
QVEEIKEYKDKEAKIAAISKGNELIKTEVLLKLQEAKSMIENEGKGDLKKKAEVPLEEST
IKLYDSRSGGTSDGNTIERGRDRSQEGDEISRGKNDGRPDVSNQNSAQRKRKMSNAEKAE
EKKREIGNEKTSSQNKGDKTKNKNKVKNQSEQTSVKPYNYKKVNYKKFHDEVERTHKQPK
SKFKKHK