| New model in OGS2.0 | DPOGS210626 |
|---|---|
| Genomic Position | scaffold1250:+ 26596-29162 |
| See gene structure | |
| CDS Length | 2400 |
| Paired RNAseq reads | 21 |
| Single RNAseq reads | 65 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | ND |
| Best Drosophila hit | ND |
| Best Human hit | ND |
| Best NR hit (blastp) | reverse transcriptase [Papilio xuthus] (0.0) |
| Best NR hit (blastx) | reverse transcriptase [Bombyx mori] (7e-176) |
| GeneOntology terms | GO:0006278 RNA-dependent DNA replication GO:0003964 RNA-directed DNA polymerase activity GO:0003723 RNA binding |
| InterPro families | IPR000477 Reverse transcriptase |
| Orthology group | MCL10007 |
Nucleotide sequence:
ATGGCGGAAGCGGTGACCCTTTCGGACCATCGGTACGTCCGATATGAGGTCTCCCCGACG
TCCCCTGGGACACCTTTCCAGCTGGGTACCAGACCACCTTTCCCAAGGTGGTCACTTGTT
CGCCTCCAACCCGATGTGGCTGAGGAGGCAGCGATGGTGAGAGCATGGGCCGAAGTGCCC
GACACTATCGCTGGGGATGCGGACAGCATGGCGGACCTCTTTGCGGATGACATTAAGGTT
GTCTGCAACGCCGCCATGCCGAAGACGCAGGCCTGCCCACGAAACAGGGGGAAAGTGTAT
TGGTGGACGCAGGAACTGTCCAGCCTGCGTACCGCCAGTATGGGAGCCAGACGCGCCTAC
CAGCGTTGCCGTAGGCGCGCCCGAGGAACGCCCGTTGTAGAGGAAGCTCTATACCGGGCC
TACCAGGACGCCAACAAGGCATTGCGGACGGCCATTCGCAAGGCCAAAGAGGATGCCTGG
GACCAGTTTCTGGGTATCCTCAATAACGACCCTTGGGGTAGGCCCTACAGGGCGATTAGG
GGGAAGTTGTCTACTGCAGCTTCCCTTACCTCCTGTATGGAGCCTGGGCTGCTGCGGAGG
GTACTGGGGACGTTGTTCCCTGATCCGGGACCTTTCGCACCTCCGTACATGGCAACCGCT
GCTCTCGCTCAGGGAGAGCGGGTTGACGGCCCTCCTGTGTCGGACGTGGAATTCAATACG
ATCCGTTCAAGACTCCGTCACAAACGCAAGGCGCCGGGGCCGGACGGGGCCCCCTCTAAG
GTGATGGATATCGCCTTGGGACCCCTGGAGGACCGGTTTCGAGCAGTGCTCGATACCTGC
ATGGCGGCGGCCCGCTTCCCCAGGCGATGGAGAGTAGGGCGGCTGTGCCTAATCCGTAAG
GAGAGCCGTCCGGCGGATGCCCCAGAGGGATACCGGCCAGTGGTGCTACTGGATGAGGCG
GGGAAGGCTTTCGAAAAGATTCTCGCCTCCCGCATCATCCAGCACCTGGAAGGTAGAGGA
CCCGACCTGGCGGAATGCCAGTACGGCTTCCGTACTGGTCGGTCTACGATCGACGCGGTG
ACCCGCCTAAAGAGGTGGACTGAGGCGGCTTTCAACAGGGGGAGGGACTACCTGCAGGAC
AGGATGGTCCTCTACGAGAGCGCGGAGGGCCGCGTCGAGTCGTGGAGAGTGGCGGCAGGA
GTACCTCAGGGTTCCGTATTAGGCCCTCTATTATGGAACCTGGGGTACAATTGGGTTCTG
CGGGGCGTGATGCCGCCGCGCATGGATGTCATCTGCTTTGCGGATGACACGCTGGTCGTG
GCGGCAGCGAATGGTTGGAATGAGGCGGTCAACCTTGCGTCTTTCGGCACCTCTTTGGTC
GTTCGGCGTATCCGCCTACTGGGTCTGGAAGTAGCCCTCAACAAAACGAGGGCCATCTCA
TTCCATGCCCCCCGACGCAGAGCCCACCTGGAGCTCAGAGTACTGGTAGAGGGGGTCCAA
ATTCCAGTAGAAATTCATACTAAGTACCTCGGCCTTATCTTGGACCCCCGGTGGAGCTTT
GAGGAGCATTTCAAACTCCTAGCTCCCAGGCTATGCGCCGCCGCAGCCGGTCTTGGACGG
CTCCTTCCCAACGTGGGAGGGCCGAACACAAAATGCCGTCGGCTGTATCACGGGGTAATA
CGGTCGATGGCACTATACGGAGCTCCGGTGTGGGCTGAGTGCCTCACATCCCGCACGCGA
GCCCTTTTGCGCAGGCCGCAAAGAATAATCGCGACCAGAGCCGTGCGGGCATATCGTACG
GTTAGCCATGAAGCGGCCTGTGTACTAGCGGCCACGCCTCCTTTGGAAATCGATGCACTT
GTGCTTGCGGAGGTGTATCATCACAAAGCCCGAACCGAGGCACAGAGAGAGGCTCTACAC
CGGTGGAAGGAGGCACTTGCCAACCCCACTGCAGGTCACTGGACGATAACGGCGTTTCGT
CCGGTGTTAGAGGAGTGGGTGGGGCGCCAGCAGGGCAGCCTCACCTTCCGTCTGGTGCAG
ATATTGACCGGACATGGTTGTTTCGGCCACTATCTGCACCGGATCGCAAGAAGAGAAGAG
ACGCCGCAGTGTCACCACTGCGGCGATCCTGACGACACTGCCGACCACACAATATCAGTG
TGTCCGGCATGGCAGTATGAGCGCCGTGAACTCACTGCGGCACTCGGCGGGAGGAGCCTC
ACGCTTCAAAATATGGTCGAAGCCATGATTGACAGCGTTGAGGCTTGGGAGGCTGTCGCT
TGTTTCGCCGAAACAGTTATGTCGGCGAAGGAAGCCGCGGAGAGGGAGCGGGAGGAGGAT
GCTCTAGCCGCTCCCCTCCGGCGTAGACGAACGGGTCGGAGGAGACGGGTGAACTTGTAA
Protein sequence:
MAEAVTLSDHRYVRYEVSPTSPGTPFQLGTRPPFPRWSLVRLQPDVAEEAAMVRAWAEVP
DTIAGDADSMADLFADDIKVVCNAAMPKTQACPRNRGKVYWWTQELSSLRTASMGARRAY
QRCRRRARGTPVVEEALYRAYQDANKALRTAIRKAKEDAWDQFLGILNNDPWGRPYRAIR
GKLSTAASLTSCMEPGLLRRVLGTLFPDPGPFAPPYMATAALAQGERVDGPPVSDVEFNT
IRSRLRHKRKAPGPDGAPSKVMDIALGPLEDRFRAVLDTCMAAARFPRRWRVGRLCLIRK
ESRPADAPEGYRPVVLLDEAGKAFEKILASRIIQHLEGRGPDLAECQYGFRTGRSTIDAV
TRLKRWTEAAFNRGRDYLQDRMVLYESAEGRVESWRVAAGVPQGSVLGPLLWNLGYNWVL
RGVMPPRMDVICFADDTLVVAAANGWNEAVNLASFGTSLVVRRIRLLGLEVALNKTRAIS
FHAPRRRAHLELRVLVEGVQIPVEIHTKYLGLILDPRWSFEEHFKLLAPRLCAAAAGLGR
LLPNVGGPNTKCRRLYHGVIRSMALYGAPVWAECLTSRTRALLRRPQRIIATRAVRAYRT
VSHEAACVLAATPPLEIDALVLAEVYHHKARTEAQREALHRWKEALANPTAGHWTITAFR
PVLEEWVGRQQGSLTFRLVQILTGHGCFGHYLHRIARREETPQCHHCGDPDDTADHTISV
CPAWQYERRELTAALGGRSLTLQNMVEAMIDSVEAWEAVACFAETVMSAKEAAEREREED
ALAAPLRRRRTGRRRRVNL