| New model in OGS2.0 | DPOGS204114 |
|---|---|
| Genomic Position | scaffold1215:- 167-4346 |
| See gene structure | |
| CDS Length | 1809 |
| Paired RNAseq reads | 405 |
| Single RNAseq reads | 958 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013603 (1e-58) |
| Best Drosophila hit | CG6729 (4e-30) |
| Best Human hit | protein SMG8 (3e-46) |
| Best NR hit (blastp) | PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] (4e-90) |
| Best NR hit (blastx) | PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] (9e-82) |
| GeneOntology terms | GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0003674 molecular_function GO:0005575 cellular_component |
| InterPro families | IPR019354 Smg8/Smg9 |
| Orthology group | MCL12334 |
Nucleotide sequence:
ATGACTACGGTATTCTCAATTAAAGATATTCCAGAATTTTCACAAAAGGAAAAGATTGTA
GTAGTAGGCATTATTGGAAAATCGCCGTTTCGATATCCAAATAAGACATCACCACTGCTT
TCTTCAGTACAATTTAAAGAAAATGACATAGAATGCCATTGGGATGAAAGACGGAGTATT
TTATATCTTCATGCAGTCACTTACTTCGACACTGCGAGATTGGCAGCATTGGCAGCAGAT
TTGAATGAGGAATCTCAGAGCACGGTCAAAGATGCTGATGCTGCTCACTGGCTTGTGGCT
TCTGGAGAGTTGGCGATAGATGCATGCAGGGCTATGGCATTGATATTTCATTTGTGCCAT
ATTGTGATTCTTTCATTACCAACCCCTGTATTTGATCTTGGATATTTACAGCTTTTTAAA
GCTATTGATGCTTACAGAACAGAGGTATCAGCACAAATTACAAGCGCTTTACACCAATCA
TGGGCAGCTGCTTGGCAGCATGGTCGGTTATGCTGTCCTCGGCTGCTATTTCACTTCAAA
CGAGCCCCCACTCCACTTAGAGCTGATCCCGCTGGCCTGAAGAGATTGGAACATGCTGTG
GAGGACCAGATATACTTCATACTCCGGAAGTCCCGACTTATAACTAATGTCTGTGCCAAA
TCTCTATTTGCTATACCTAAGAATGAGGAGTTTGTGTATATAAGCGCTGAGGAGGTGGGA
TCGGCTCGCGACACTAGTTCGTTACTCCGTGGCTTGGTGCAGATGTGTTCCGGTTCAGGC
GCCCCAACATCATCAGACCGACCCAGCTTCAGACATTTCCTTCAAGGTCACCTGAATTTA
GCTTTCGGCGAAGGCTTTGACGATAATGTTGGCAAGTACGCCATGAGCACGTCATATTTT
GAGCTACCCTCAGCATCATGTTGGCGGGGCGCGGCACGTGTCTTACACCGTCAATACTCC
CAGCAGTCGACCGTCCTCTTCGACGCCCTGGCCACAGACGTGAGGTTCTCTCAGGCCAGA
TGCGCGAAGGTGTTACCCATAGCACAGGCCTCCTACGCGGAGGGACTGCCTCCTCACTAC
TCCAGCCAGCACCACGCGCATAAGCTGGTGGTAGCGCTCGGTGTAGTTGAGGCGATGGCC
CGAGGTCCCCTCGCTGGCGGTGCCCGAACTCGACTTCGGGCCGCCTGCGACACCATCAGA
CGAGCTAGGGAACTGTGCGAGGAACCCAGCCTCACACACCACCCTTGTATACATCCCAAA
CACGACAGTTCCAAAGAGCATTCATCGGGAGTGCGTTATGTGAGTGCGTGCAACTGCGGC
CGCACGCGTGTGTCACGCGACGACCCGTACTGTGCGCGATCAGCCAACTTCACCTTCTAC
ACCCTGGCCGCTGAGCAGTGCAATTGTGACACCTTACAAGCGATCAGCTTCCCCGTCTTT
CAACCTTCAACCCCTACATTCAGGGCAGCGTCAGTTAAAGGTGCTACTGTTAAAACTCAA
GAGTTGTCCGAAGTACGACAGCAGTTAGAGGTCACGGAGGCCGAGTCACCCCAAGGGGAA
GGCTCGCAACGAGGCTCCTGGTCACCCCCAGACGTGCTGTCACCTGGATCAGCGAGGGAC
GAAGATGAAGAGGATCCTGAGGATTCCAGCGATGAAGGAATAGAGGTCGTCACAGAGCAG
GTTTCCTACCTGCTGCCTCCTGAATTTCCGTTGCCTTACCATTTTGTCTCTAGTGGCCTG
TCTGGTATCGTTGTATTAGGCCTGCAAAATATTCTACCGCCGTATCTAGACAGAGGTGCC
ATCTATTAG
Protein sequence:
MTTVFSIKDIPEFSQKEKIVVVGIIGKSPFRYPNKTSPLLSSVQFKENDIECHWDERRSI
LYLHAVTYFDTARLAALAADLNEESQSTVKDADAAHWLVASGELAIDACRAMALIFHLCH
IVILSLPTPVFDLGYLQLFKAIDAYRTEVSAQITSALHQSWAAAWQHGRLCCPRLLFHFK
RAPTPLRADPAGLKRLEHAVEDQIYFILRKSRLITNVCAKSLFAIPKNEEFVYISAEEVG
SARDTSSLLRGLVQMCSGSGAPTSSDRPSFRHFLQGHLNLAFGEGFDDNVGKYAMSTSYF
ELPSASCWRGAARVLHRQYSQQSTVLFDALATDVRFSQARCAKVLPIAQASYAEGLPPHY
SSQHHAHKLVVALGVVEAMARGPLAGGARTRLRAACDTIRRARELCEEPSLTHHPCIHPK
HDSSKEHSSGVRYVSACNCGRTRVSRDDPYCARSANFTFYTLAAEQCNCDTLQAISFPVF
QPSTPTFRAASVKGATVKTQELSEVRQQLEVTEAESPQGEGSQRGSWSPPDVLSPGSARD
EDEEDPEDSSDEGIEVVTEQVSYLLPPEFPLPYHFVSSGLSGIVVLGLQNILPPYLDRGA
IY