| New model in OGS2.0 | DPOGS206806 |
|---|---|
| Genomic Position | scaffold1:- 3723997-3746872 |
| See gene structure | |
| CDS Length | 2718 |
| Paired RNAseq reads | 5472 |
| Single RNAseq reads | 12481 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000629 (2e-06) |
| Best Drosophila hit | upstream of N-ras, isoform A (2e-169) |
| Best Human hit | cold shock domain-containing protein E1 isoform 1 (4e-146) |
| Best NR hit (blastp) | PREDICTED: similar to AGAP004937-PA [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to AGAP004937-PA [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0003676 nucleic acid binding GO:0006355 regulation of transcription, DNA-dependent GO:0003677 DNA binding GO:0017148 negative regulation of translation GO:0005515 protein binding GO:0009047 dosage compensation, by hyperactivation of X chromosome GO:0005737 cytoplasm GO:0003729 mRNA binding GO:0003730 mRNA 3'-UTR binding |
| InterPro families | IPR016027 Nucleic acid-binding, OB-fold-like IPR012340 Nucleic acid-binding, OB-fold IPR002059 Cold-shock protein, DNA-binding IPR011129 Cold shock protein IPR019844 Cold-shock conserved site |
| Orthology group | MCL14302 |
Nucleotide sequence:
ATGTCAAGCAATCCTCAGTGGAAAATGTTCCAGCCGCCAGATTCACACAACTCCCCTTTA
CAGGATATTTTAGATCTCCAACAATCAAATATGCAGGCCAAACAGGTTTATCGTAATGGT
ACTTACAGCGGTGAGTACCCAAGTTCCCCTCGAGATAATTTTAATAATATGGGCAAGTCA
AGTGGTGGAAATAGATTTTCTGTTGGCAATTATAATTTGGATGGATGTCCCATGGGAGAT
TCTGTGGGAGTGTATTCTTCCAGTTCAACCAATAACCAATCTCAGTATGATTCCACGAAT
CACCCACCTATAAGAGAAACAGGGATTATTGAAAAATTGCTTCATTCCTATGGCTTTATA
CAATGCTGCGAGAGGCAAGCTCGTCTATTCTTCCACTTTAGCCAGTTTGGTGGTAATATA
GACCATCTGAAAATAGGTGACCCAGTAGAATTCGAGATGACTTACGACCGTCGTACTGGC
AAACCAATTGCGTCTACAGTAACTAAAATAGCCCCCGAGGTGGTACTGAGTGAGGCTCGA
GTTACCGGAGTAGTGACTACGGAGGTGAAGGGAGAGGGTTCAGGGGATAACACCGGACGC
ATATCGTATGAGAACCGCGGCGAATGCTTTTTCTTGCCGTATACTAAAGATGACGTCGAA
GGAAACGTAACCCTTCGTACAGGAGACGCTGTCAGCTTCCAAATCGCAACCAACCAAAGA
GGCACTCTTGGAGCGTGTCACGTGCGTTTCGAGAACCCCGCGCATCCCGTCAAGTATCAT
GGCGTAGTGTGTTCTAAGAAGGAAAATTTTGGTTTCATCGAGCGGGCTGATGTCGTTAAG
GAGATATTCTTCCATTACTCTGAAGCCAAGGTCAAAGAGGAGCTGTCTCTAGGAGATGAC
GTGGAGTTTATAATACAGACTAGGAATGGTAAGGAGGTTGCGTGCAACATCAGTAAGCTG
CCGAGTGGGTCGGTTGTGTTCGAAGACGTTAGCCCGGAGCAGCTTCGGGGGCAGGTGCTG
AAGCCGCTGGAGCGTGGGGCGCGACTCCAGAGCGACCCTCTACCAGGCAGGATCAGATAC
AGGGCACCGGACCATTCTGAAGTTGAGGTGCCTTTCGGCGACAAAGACCAGTGCGGGGAG
TTCACCTTGCGGCACGGGGATTGGGTCCAGTTCCAAGTGGCAACGGACAGACGGGATCAA
CTGAAACGGGCAACCAATATATCGCTGCTGGATGAGTCATTCAACGTATCAGGCGAAAGA
CGTGAACAGGGCATTGTTTGTTCCTTGAGAGATGGCTTCGGTTTCATCCGATGCGTAGAG
CGTGAGCAGACCATGTTCTTCCACTTCGCCGAGGTGTTGCGTCTCGGCCAGGAGTTAAGT
GTTGGCGACGAGGTTGAGTTCACCGTGGATCCTTTGTCATCCTTCTCCAACATGAACAGC
CGCCAGTCAGCCATCCGTATCCAGCACTTGTCTGCTGGTTCCGTACAGTTCGAGTCCCTT
GTGGAGCGAGGCGTCCGCGGGGTCGTCACCAAGGAAGCGCATTATTCCAACGAGAGTCCC
AACAGAAACTCACCGAATGAGTCCGGTATCATAACGTGTCAAATAAACAACTTGAAGAAA
TCTATACCATACACGGTCAAGAAATGTGAATCAAAGATGCTGCCTCGCGTGGGCGACAAA
GTGACCTTCGATCTGTATCAGGTGAAGAGGACTAAGGAGCTGGTTGCTATGAGTGTGACG
ATGCAGCACAGCATGACGAACGGCCGGATTGGAGGGGCGGGGGCTGGAGGGGGATCGGGG
GCGGCCACCCAGCAGGGCTTCGTGGCCGCACTCAAGGATGGCTTCGGTTTCATTGAGACA
GCCGATCACACCAGGGAGGTGTTCTTTCATTTCAGTAATCTGGAAGGCAGCCCGGATGTA
TTGGAGTTGGGTTCAGAGGTGGAGTACACTGTGGGTCGTCAGAGCAGCGCTAGCGGTGGT
TGTGCCAGCGCCGAACATGTGCGACCACTGCCTCGTGGAACTGTGCCCATTGCACGACCC
CTGGAACCTCCTCTCACCGGCACGGTGACACGTACGCTGAGGGCCCTCAACCCCGACCAG
GCCAAGTACTCTGGCTTAATCCAAGTGGAGGGTGGAATGACCTACGAATTTGGCATCATG
GGACTAGCGAGCAAGCGAGAGATTCTGCAAGTTGGCGATCCGGTCACATTTCAGTCGGAC
ATGGAAGGTCGCGCTACTAACATAGTGCCCATTAGAAAGAAGAGACGGGCCACCGTAGAC
GCTATAAAAGGCGGCTTCGGTTTCCTGTCTCTCGAGGCTGAGGAAGGTCGCCGTCTCTTC
TTCCACATGAGTGAGGTCCGCGGGAACCCTTCAGATCTGGCGCCCGGGGACGCCGTCGAG
TTTGTGATGCTAACCAACCCCAGGAACGGGAAGTGCTCAGCCTGCAATGTCGTCAAAGTC
GGGAGCAACAGCAGCAATAGCAAGATATCAAAGCGCGATCGCGAGAGGGAGCGTGAGAGA
GAGCGTCCAGAGAGGCCGGAGCGTCTGCTGGCCAGGCTGAGGACGGTGTCACTGGAGGAG
CCCGGGCCGCGCGTGCTGGTGTTGCGACCCCCGCGGGGACCGGACGGCAGCCTCGATACC
AGCCGCACCACCACCCGCCGCAGAGTCTACAGGTTCGGTAAGCAGCCCCCGCCGCCGCCG
CCGCCGGGCCGTCCGTGA
Protein sequence:
MSSNPQWKMFQPPDSHNSPLQDILDLQQSNMQAKQVYRNGTYSGEYPSSPRDNFNNMGKS
SGGNRFSVGNYNLDGCPMGDSVGVYSSSSTNNQSQYDSTNHPPIRETGIIEKLLHSYGFI
QCCERQARLFFHFSQFGGNIDHLKIGDPVEFEMTYDRRTGKPIASTVTKIAPEVVLSEAR
VTGVVTTEVKGEGSGDNTGRISYENRGECFFLPYTKDDVEGNVTLRTGDAVSFQIATNQR
GTLGACHVRFENPAHPVKYHGVVCSKKENFGFIERADVVKEIFFHYSEAKVKEELSLGDD
VEFIIQTRNGKEVACNISKLPSGSVVFEDVSPEQLRGQVLKPLERGARLQSDPLPGRIRY
RAPDHSEVEVPFGDKDQCGEFTLRHGDWVQFQVATDRRDQLKRATNISLLDESFNVSGER
REQGIVCSLRDGFGFIRCVEREQTMFFHFAEVLRLGQELSVGDEVEFTVDPLSSFSNMNS
RQSAIRIQHLSAGSVQFESLVERGVRGVVTKEAHYSNESPNRNSPNESGIITCQINNLKK
SIPYTVKKCESKMLPRVGDKVTFDLYQVKRTKELVAMSVTMQHSMTNGRIGGAGAGGGSG
AATQQGFVAALKDGFGFIETADHTREVFFHFSNLEGSPDVLELGSEVEYTVGRQSSASGG
CASAEHVRPLPRGTVPIARPLEPPLTGTVTRTLRALNPDQAKYSGLIQVEGGMTYEFGIM
GLASKREILQVGDPVTFQSDMEGRATNIVPIRKKRRATVDAIKGGFGFLSLEAEEGRRLF
FHMSEVRGNPSDLAPGDAVEFVMLTNPRNGKCSACNVVKVGSNSSNSKISKRDRERERER
ERPERPERLLARLRTVSLEEPGPRVLVLRPPRGPDGSLDTSRTTTRRRVYRFGKQPPPPP
PPGRP