| New model in OGS2.0 | DPOGS206827 |
|---|---|
| Genomic Position | scaffold1:- 3049359-3050636 |
| See gene structure | |
| CDS Length | 1278 |
| Paired RNAseq reads | 1848 |
| Single RNAseq reads | 6352 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012772 (0.0) |
| Best Drosophila hit | helicase at 25E, isoform B (0.0) |
| Best Human hit | ATP-dependent RNA helicase DDX39 (0.0) |
| Best NR hit (blastp) | GG24297 [Drosophila erecta] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to Helicase at 25E CG7269-PA, isoform A [Apis mellifera] (0.0) |
| GeneOntology terms | GO:0005634 nucleus GO:0004004 ATP-dependent RNA helicase activity GO:0003724 RNA helicase activity GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005681 spliceosomal complex GO:0006406 mRNA export from nucleus GO:0003676 nucleic acid binding GO:0005524 ATP binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0007052 mitotic spindle organization GO:0005875 microtubule associated complex |
| InterPro families | IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR001650 Helicase, C-terminal IPR014001 DEAD-like helicase IPR014014 RNA helicase, DEAD-box type, Q motif |
| Orthology group | MCL10257 |
Nucleotide sequence:
ATGGCTGATAACGACGATCTTCTCGACTATGAAGATGAAGAGCAGGCAGATCAACAGAAC
GTTGACGGAGCGACCGAAGCGGCGCCAAAAAAGGAGGTTAAGGGTTCCTACGTATCGATT
CACAGCTCTGGCTTTAGGGACTTTCTCCTTAAGCCTGAGATTCTACGAGCCATAGTGGAC
TGTGGTTTCGAACATCCATCAGAAGTTCAACATGAATGTATTCCTCAAGCGGTACTGGGT
ATGGATATCTTATGCCAAGCTAAGTCCGGTATGGGCAAAACCGCGGTGTTTGTACTAGCC
ACGTTACAGCAACTAGAGCCTTCGGATAATCATGTTTATGTTCTTGTCATGTGCCACACC
CGAGAATTAGCTTTTCAAATCAGCAAAGAGTATGAACGCTTTTCTAAGTACATGGCCGGC
GTCCGTGTGTCAGTTTTCTTTGGCGGCATGCCGATTCAAAAAGATGAGGATGTTTTAAAA
ACTGCATGCCCTCATATCGTCGTTGGGACACCAGGACGTATTTTAGCCCTCGTTAACAAT
AAGAAATTAAACTTGAAACATCTAAAACATTTCATACTTGATGAATGCGACAAGATGTTG
GAATCTCTGGATATGAGAAGAGATGTGCAAGAAATATTCCGAAACACTCCTCATGGGAAA
CAAGTGATGATGTTTTCTGCCACTTTGAGTAAAGATATCAGACCCGTATGTAAGAAATTC
ATGCAGGACCCCATGGAAGTGTATGTTGATGATGAAGCAAAACTTACTCTGCATGGACTT
CAGCAGCACTATGTGAAACTTAAAGAAAATGAGAAGAATAAGAAGTTATTTGAACTCTTA
GATGTGTTGGAATTCAACCAAGTAGTTATATTTGTAAAATCGGTTCAAAGATGCATAGCT
CTAGCACAACTTTTGACGGACCAAAACTTCCCTGCCATTGGAATTCATAGAAACATGACA
CAAGACGAGCGTCTTTCCCGTTACCAACAGTTCAAAGATTTCCAAAAGAGAATATTGGTA
GCAACCAATCTGTTTGGAAGAGGGATGGATATTGAAAGAGTTAATATAGTATTTAATTAT
GACATGCCTGAAGACTCTGATACCTACCTCCATAGAGTGGCCCGAGCAGGAAGATTCGGT
ACCAAAGGTCTAGCCATAACAATGGTATCGGATGAAAATGATGCAAAAATCCTGAACGAA
GTCCAGGACCGTTTTGATGTCAACATAACAGAGCTACCTGATGAGATTGAGCTATCCACT
TACATAGAGGGACGATAA
Protein sequence:
MADNDDLLDYEDEEQADQQNVDGATEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNHVYVLVMCHT
RELAFQISKEYERFSKYMAGVRVSVFFGGMPIQKDEDVLKTACPHIVVGTPGRILALVNN
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKDIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDENDAKILNEVQDRFDVNITELPDEIELST
YIEGR