New model in OGS2.0 | DPOGS206830  |
---|---|
Genomic Position | scaffold1:- 3016482-3019775 |
See gene structure | |
CDS Length | 1716 |
Paired RNAseq reads   | 260 |
Single RNAseq reads   | 670 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012775 (0.0) |
Best Drosophila hit   | CG9630 (8e-147) |
Best Human hit | ATP-dependent RNA helicase DDX55 (4e-112) |
Best NR hit (blastp)   | ATP-dependent RNA helicase DDX55 [Culex quinquefasciatus] (2e-180) |
Best NR hit (blastx)   | ATP-dependent RNA helicase DDX55 [Culex quinquefasciatus] (8e-154) |
GeneOntology terms    | GO:0004004 ATP-dependent RNA helicase activity GO:0005575 cellular_component GO:0008150 biological_process GO:0003676 nucleic acid binding GO:0005524 ATP binding |
InterPro families    | IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR001650 Helicase, C-terminal IPR014001 DEAD-like helicase IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site |
Orthology group | MCL12738 |
Nucleotide sequence:
ATGACACCAATACAGGCGGCTGTTATTCCTCTTATACTAACCTGTAAGGATGTCGTAGCT
GAAGCGGTAACGGGCTCAGGAAAAACGTTGGCTTTTGTGGTTCCATTATTAGAAATGTTA
ATGAAGAAAGCAAAGGATTCACCACTCCGTAAGGATTATATCTATGCTGTCATTATTTCT
CCTACTAGAGAACTAGCTACACAAATAGTAAAGGTTATAGAATTATTTCTGGCGGAACCA
GAGCTGAAGCACTTAACAATCTCATTGCTTGTTGGTGGTAGACCAATAGAAATGGATGCT
GAGAGTATGATGAAAGGTGCACAGATTACTGTCTGCACACCGGGGAGGTTTCAGGATTTG
TTAGAGGAAAGGAAACACCTTAACCTGTCGGCGAGACTAAGAGATCTGGAATTCCTAGTC
CTGGATGAGGCTGACAGATTGCTTGATTTGGGATTCAGTGCTACCCTTACAACCATTTTA
CAATACTTACCGAGACAGCGACGAACGGGCCTGTTCTCAGCAACTCAGACCAAAGAGTTG
CAAGATCTTGTTAGAGCTGGTTTGAGGAACCCGGTGCTGATAAGTGTTAAGGAAAAATCC
AGCATCAGCACTCCTGTCGCATTAGAAAATTTTTACATCATTGTGCAACCCCAAGATAAG
CTTTTAGTTCTGCTTAATTTCATCAGAAATAGGAAGGTAACAAAGGGTCTCTTCTTTCTA
CCAACTTGCGCGTGTGTTGACTACTGGGCGGATGTTCTGCCGGGTTTCTTACCAGACATG
AAGATATATGCTATACACGGTAAAATGAAACAGAAAAGAAACAAAATATTGGAAAAGTTC
AGAGCTGCAGAAAATACCATCTTGTTGTGCACGGACTTGTTAGCACGGGGCCTGGATATC
CCTTCGGTGGAATGGGTGCTCCAGTGGGAACCTCCAACCAGTCCCTCCGCGCTGGTGCAT
CGCGCAGGGAGAAGTGCCCGCGGAGGCTGCGCTGGCGCCTCCCTCCTACCGCTGCTGCCC
ACTGAGGATTCCTACGTGCCTTTTATCAAGAACAACCAGAAAGTGGAGCTCAAAGACTAC
AAGAGTTCTAACGATGTGATCAAGATAACTGATAAACTCAGAGATAAGGTTCTATCCATT
CTTCACGATCAGCAAGTTAAAGACAGGGCTGTATTTGATAAGGGACAGAGGGCTTTTGTA
TCCCACATGCGAGCTTACTCTAAACACGAATGCAATTTACTTTTACAACTCAAAGAACTA
CCTTTGGGTCACATTGCTACAAGCTATGGCCTCATTAAACTGCCCCTCATGCCAGAGATA
AAAGACGAACACAAGAAACAGTTCGTGGGTCCCAAGGAGGCGATAGATTTCAACAGCATA
CCGTATAAAGACAAACAGAAGGAACAAAGCAGATTGCAAAAGTTAGAAGAGTATAAGAAG
ACGGGAATGTGGCCATCAAAAAAGAAAAAGAAAATGTCTCAATCTAAGCCATGGGAGCAG
ACGAAACAGAACAAGCTTGAAAAGCAAGACAAAAGGAAGAAAAGGAAAGAGTTAAAAAAG
AAGTTAAACGAAGAAGGAAAGAAAGGGAAGAAACGGAAAACAGTAACTCAAGAGGAACTT
GATGAGCTGGCAGCTGATGTGGCCTTAATAAAGAAGCTGAAGAAGAGGAAGATCACAGCT
GAACAGTTCGACCAAGCATTCGATATGGACAAATAA
Protein sequence:
MTPIQAAVIPLILTCKDVVAEAVTGSGKTLAFVVPLLEMLMKKAKDSPLRKDYIYAVIIS
PTRELATQIVKVIELFLAEPELKHLTISLLVGGRPIEMDAESMMKGAQITVCTPGRFQDL
LEERKHLNLSARLRDLEFLVLDEADRLLDLGFSATLTTILQYLPRQRRTGLFSATQTKEL
QDLVRAGLRNPVLISVKEKSSISTPVALENFYIIVQPQDKLLVLLNFIRNRKVTKGLFFL
PTCACVDYWADVLPGFLPDMKIYAIHGKMKQKRNKILEKFRAAENTILLCTDLLARGLDI
PSVEWVLQWEPPTSPSALVHRAGRSARGGCAGASLLPLLPTEDSYVPFIKNNQKVELKDY
KSSNDVIKITDKLRDKVLSILHDQQVKDRAVFDKGQRAFVSHMRAYSKHECNLLLQLKEL
PLGHIATSYGLIKLPLMPEIKDEHKKQFVGPKEAIDFNSIPYKDKQKEQSRLQKLEEYKK
TGMWPSKKKKKMSQSKPWEQTKQNKLEKQDKRKKRKELKKKLNEEGKKGKKRKTVTQEEL
DELAADVALIKKLKKRKITAEQFDQAFDMDK