| New model in OGS2.0 | DPOGS206854 |
|---|---|
| Genomic Position | scaffold1:- 2490681-2501750 |
| See gene structure | |
| CDS Length | 1110 |
| Paired RNAseq reads | 177 |
| Single RNAseq reads | 502 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013057 (2e-78) |
| Best Drosophila hit | rhomboid-4, isoform A (7e-62) |
| Best Human hit | rhomboid-related protein 3 (4e-28) |
| Best NR hit (blastp) | PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] (6e-116) |
| Best NR hit (blastx) | PREDICTED: similar to rhomboid-4 CG1697-PB, isoform B [Apis mellifera] (4e-91) |
| GeneOntology terms | GO:0005886 plasma membrane GO:0008236 serine-type peptidase activity GO:0016021 integral to membrane GO:0004252 serine-type endopeptidase activity GO:0005509 calcium ion binding |
| InterPro families | IPR002610 Peptidase S54, rhomboid IPR011992 EF-hand-like domain IPR018247 EF-Hand 1, calcium-binding site IPR017213 Peptidase S54, rhomboid, metazoan IPR022764 Peptidase S54, rhomboid domain IPR018248 EF-hand IPR018249 EF-HAND 2 IPR002048 Calcium-binding EF-hand |
| Orthology group | MCL15106 |
Nucleotide sequence:
ATGCCGTCAGGTCAGAGAGAAACAACTGTCTCCATACCACTTACCCCAACGCGATCAGAT
TTGTACTGGAGAAGGATATTTAATAAGTACGATAGAGATAATGATGGTCGCATCTCATAC
GTTGAGTTAAAGGCGATCATAGAGTCCAGGGAGTACGACCATGATTTACCAGACAACGTG
GTTGAAAAGATCATGGCACTCGCCGATAGAGATAACTCCGGATATCTGGACTTCACGGAG
TTCGTCGCCATGATGAAGAACCCAGAACTTAAGGCTGTATTCGGACATTTTGTAGCCAGA
TATGTTCACTCCATCATACCGCATCGAGACCCAGTTGATACTATTGACAGGTGGCCGGGG
CAAGGATTTCGTGCGGTCTCAACAACAGATGGCGACGGTACATACGAAGAGGAGTATAGC
TGCTGGCCGCCGGCCATATGTATGATATTGATATCCATAGTCGAGATAGTACTGTTCTGC
TATGACGCCGCCCAGGGGAAGACGGACGCCACCGGTCCCATCGCCCAGATATTCATATAC
AATCCCCACAAGAGACAGGAGGCTTGGCGGTTCTTGACCTACATGCTGGTCCATGTTGGT
GTAGTTCACCTTCTAGTTAACTTGTTGGTTCAATTGTTCCTGGGAGTCCCACTGGAGATG
GTTCATCGCTGGTGGCGCGTGGTGCTGGTGTATCTGGCGGGAGTCGCTGCTGGATCTCTA
GCGACCAGCCTCACAGATCCTAAAGTATATCTAGCTGGCGCATCCGGAGGGGTGTATGCT
CTTATCGCAGCTCATATCGCGACCATTATTATGAACTGGTCTGAGATGGAGTTTGCGATA
ATCCAGCTGTTAGTGTTCTTACTTCTGGCAACGGTTGACATCGGTACGGCCGTGTACGAT
CGTTACTGGAGACACCTGCAGCAGAACATCGGATATGTCGCCCATTTAGCAGGCGCAGTG
GCTGGTCTTCTGGTTGGTATAGGAGTACTTCGTAATCTAGAAAAGAGAACTTGGGAGAAA
CGTCTGTGGTGGGCGGCGGTGGTGCTGTACTTCTCGCTCATGATAGCGGGGATATTAGCC
AATGTGTTCTGGAAATCACATTTCCAATAA
Protein sequence:
MPSGQRETTVSIPLTPTRSDLYWRRIFNKYDRDNDGRISYVELKAIIESREYDHDLPDNV
VEKIMALADRDNSGYLDFTEFVAMMKNPELKAVFGHFVARYVHSIIPHRDPVDTIDRWPG
QGFRAVSTTDGDGTYEEEYSCWPPAICMILISIVEIVLFCYDAAQGKTDATGPIAQIFIY
NPHKRQEAWRFLTYMLVHVGVVHLLVNLLVQLFLGVPLEMVHRWWRVVLVYLAGVAAGSL
ATSLTDPKVYLAGASGGVYALIAAHIATIIMNWSEMEFAIIQLLVFLLLATVDIGTAVYD
RYWRHLQQNIGYVAHLAGAVAGLLVGIGVLRNLEKRTWEKRLWWAAVVLYFSLMIAGILA
NVFWKSHFQ