New model in OGS2.0 | DPOGS206874  |
---|---|
Genomic Position | scaffold1:- 1887133-1888436 |
See gene structure | |
CDS Length | 1161 |
Paired RNAseq reads   | 70 |
Single RNAseq reads   | 211 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013150 (4e-144) |
Best Drosophila hit   | Rad9, isoform B (1e-30) |
Best Human hit | cell cycle checkpoint control protein RAD9A (2e-44) |
Best NR hit (blastp)   | PREDICTED: similar to RAD9 homolog A (S. pombe) [Ciona intestinalis] (5e-57) |
Best NR hit (blastx)   | PREDICTED: similar to RAD9 homolog A (S. pombe) [Ciona intestinalis] (3e-56) |
GeneOntology terms    | GO:0016787 hydrolase activity GO:0004518 nuclease activity GO:0004527 exonuclease activity GO:0006974 response to DNA damage stimulus GO:0008853 exodeoxyribonuclease III activity GO:0005634 nucleus GO:0000075 cell cycle checkpoint GO:0000077 DNA damage checkpoint GO:0009314 response to radiation GO:0005737 cytoplasm GO:0005515 protein binding GO:0006281 DNA repair GO:0043065 positive regulation of apoptosis |
InterPro families   | IPR007268 Rad9 |
Orthology group | MCL13639 |
Nucleotide sequence:
ATGAAATGTCACGTACCTGGTCCGAATGTTAAAGTTTTAGCAAGAACTGTTCATGCTTTA
GCAAGATTTGGTGATGAATTGTATTTGGAATCCCTCCCAGATTGTATACTATTGAGAACA
CTCAATGCCTCCGAAAGCGCCTATGCAATGGTTAAATTAAACAAAAATTTCTTTTCGCAT
TTTAATTATAATTATTATTCTATAGAAAATGATGGATTAAAATGTAAAATTTCCATGAAA
TCTGCATTAAATGCTTTTAAATCCCCTGCACATATGGACAAACAGGTTGAGAATCTTGAG
ATTAAACTTGATCCTCACTCTTCAAAATTAATATTTCAACTCAAATGTAAGCATGGTATT
GTTAAGACCCATTATGTGTCAATATTGGATTGCAAAGCCATGCAAGCAATTTACACAAAA
GATTTAGTGCCTAACAGAATAACATCATCTCAAAGGCTGTTCTCAGAAGCTATAGGAAAT
TTTCAATGTTCAGATGATCAAGTAACGCTAGAGGTGACAAGTGAATCACTTATAATTAAA
AATTTTGGCGATACCCCTACAGACCTTTCAAGGATTATTAGAAGTCAAGTCACAATTAAA
CCGTTTGAGTTCAGCAGTTATACTATTGGGACGGACACCAATATTACATTTACAATGAAA
GAATTCAGAGCATTGTTAGGCTTTGCTGAAGGCTTAAATCTGCCCGTGCAACTACATTTT
GAGATTACCGGTAAACCTGCAGTATTTATAGTACATAATGGTACTACTATTGAGGCACAT
TTTGTATTAGCTACCTCAAAACCTGATATAGCAACTCAATATACATCTCAACAAACAACA
AATTCAGAAAGAAAAAGGAAAGATGACTCAAATGATAACAATATCTCAGCTAAAAAGGCA
CATCTAGAAGATCTATCGAATCAGTTTCAAGAAGATTCAAATTTGTTTAATTATATACCA
AATAATATATCACAGAATGTGATTGAAAATATAAATAATTTAGAAAAGGCAGATTCCATG
GATACAAACCGTGATAACATTCCAGCATCGCCGACGTCCAAAATGAAAATAGCATCAGTA
TTTAAAAGGTGCTTTGAGAGCACTTTTGACCCTAGGATAATTCATGGTGTAGTGTTAGCT
GAGAACTCTGATAGTGACTAA
Protein sequence:
MKCHVPGPNVKVLARTVHALARFGDELYLESLPDCILLRTLNASESAYAMVKLNKNFFSH
FNYNYYSIENDGLKCKISMKSALNAFKSPAHMDKQVENLEIKLDPHSSKLIFQLKCKHGI
VKTHYVSILDCKAMQAIYTKDLVPNRITSSQRLFSEAIGNFQCSDDQVTLEVTSESLIIK
NFGDTPTDLSRIIRSQVTIKPFEFSSYTIGTDTNITFTMKEFRALLGFAEGLNLPVQLHF
EITGKPAVFIVHNGTTIEAHFVLATSKPDIATQYTSQQTTNSERKRKDDSNDNNISAKKA
HLEDLSNQFQEDSNLFNYIPNNISQNVIENINNLEKADSMDTNRDNIPASPTSKMKIASV
FKRCFESTFDPRIIHGVVLAENSDSD