| New model in OGS2.0 | DPOGS206894 |
|---|---|
| Genomic Position | scaffold1:- 1417577-1422508 |
| See gene structure | |
| CDS Length | 2637 |
| Paired RNAseq reads | 14130 |
| Single RNAseq reads | 31880 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012851 (2e-70) |
| Best Drosophila hit | eIF3-S8 (0.0) |
| Best Human hit | eukaryotic translation initiation factor 3 subunit C (0.0) |
| Best NR hit (blastp) | eukaryotic translation initiation factor 3 subunit C [Bombyx mori] (0.0) |
| Best NR hit (blastx) | eukaryotic translation initiation factor 3 subunit C [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0006413 translational initiation GO:0003743 translation initiation factor activity GO:0005852 eukaryotic translation initiation factor 3 complex GO:0005829 cytosol |
| InterPro families | IPR011991 Winged helix-turn-helix transcription repressor DNA-binding IPR008905 Eukaryotic translation initiation factor 3 subunit 8, N-terminal IPR000717 Proteasome component (PCI) domain |
| Orthology group | MCL12416 |
Nucleotide sequence:
ATGAGTCGGTTCTTCGCAACTGGAACTGACTCCGAGTCTGAAAGTTCATCTGAAGAGGAA
CAGGTAGTAAGAGCGCCGGCGCCCGTTTACACGTTCAGTGATGATGAAGAAGAAACTAAA
CGTGTTGTACGTTCTATGAAAGAGAAAAGATATGAAGAATTGGAAGGAATAATTCATTCG
ATTCGTAACCATCGTAAGATCAAGGACTTCGCGTCAGCTTTAGCTTCATTTGAAGAGCTC
CAAAAGGCTTACACTCGAGCAGCACCTGTTGTCGCTAAGGAGGAAAACGGTGTCGCTCCA
CGTTTCTTTATTAGAGCGTTGACAGAACTAGATGATTGGGTCTCGGGAGCATGGAATGAT
CGAGACAATAGGAAAACTCTTTCCAAGGGCAACAGTAAAGCACTGACGTCCTTGAGACAG
AAACTTCGGAAGTATATAAAGGAGTTTGATGCCGAAATTTCCAAATTCCGTGAAAATCCA
GACTTACCAGACGATGACGACGAGCGCAAAGATACGTCTTCATCTGACGAATCCGAAGAT
GAAGAAAAGGTTAAAGAAAAACCAAGAGTTCGCCGTTCACCGGAGCCCCAGCGTGGGCCG
CCGCCTCAAGATGATGACTCATCCGACACTTTCGACTGGGGTTCTAGTTCGTCTGATTCG
AGCTCAAGTTCCGACGATGAGACAAGGGCTGCAACAATACGAGAGAAATTCTTAAAGAAG
ACCACGGAAAGGGATGACGATGAGGAGAGAGACAGGCGCCGTGCTAGGCGTGAGAGACGA
GAAAGGGTTGGGAAAATTAGCAAGAAGGATCAAGCTGATGACGGTGGAGAATGGGAGACA
GTAAGGAAGGGCGCCGCGACATCAGATAAACCAAAAATGTTCGCTAAGGACAGTGACATT
GATGCAGCGTTAGTAGTGAAGAAACTTGGCGAAATCAGTGCAGCTCGTGGTCGGAAAAGA
ACAGACCGAAGGGCACAACTGGAACTACTTCATGAACTCCGAACTGTGGCACAACAGCAC
AACCTCGGTGATGCTCTCCAGCTCAAACTGCGCGCTGCAACTGTTGCGTCACTTTTCGAT
TACAACCCCAAGGTCTCTGATGCCATGAAACCCGAATACTGGTCGCGCCTTGTAGAGAAT
GTGGATCAAATGGTCACTCTCCTTCTAGCCCATGAGGATATGATGCTAAGTGAAACAATC
ACCGAGGAGAATGAACAGCTAGTTACTCCACCATTTAAAGTCAGGGGCTGTCTGCTGACC
GCATTGGAGAGACTTGACGACGAGTTCATAAAGCTGCTTAAAGAATGCGACCCTCATTCC
AACGACTACGTAGAGAGATTGAAAGATGAAGTAAGGGTGTCCGCTCTTATCGATCGAGTC
TGCCAGGTCGTAGAACGAGATGGAAGCCCTCAGGAAATCTGTCGCGCATATTTACGTAAA
ATTGATCATCTTTACTATAAATTTGATCCTCGTGCTATCAAGAAAGATTTGTCACCAGGT
GAAGAAACAACTATTAAAAAGATGGAACGTCTATGCAAGTATATTTATGCTAACGATGAT
TCCGACCGTCTGAGAACTCGAGCGATACTATCGCATATATACCATCACGCCTTGCACGAC
AACTGGTTCCAGGCGAGGGATCTTCTTCTCATGTCCCATCTTCAAGAGAACGTTCAACAC
TCCGATCCCAGCACTCAGATATTGTACAACCGTACAATGGCTAATCTTGGGTTATGTGCT
TTCCGTCGGGGCAATGTCAAGGAAGCCCATGGTTGTTTGGCCGAACTCATGATGACGGGC
AAACCGAAAGAGTTACTCGCTCAGGGCTTGCTGCCACAGCGTCAACATGAGCGTTCTAAG
GAACAGGAGAAAATAGAGAAGCAGCGCCAAATGCCGTTCCATATGCACATTAACTTGGAA
CTTTTGGAGTGCGTCTACTTGGTATCGGCCATGCTGATTGAAATTCCATACATGGCTGCT
CATGAATTTGATGCCCGTCGTCGTATGATAAGTAAGACATTCTATCAGAACTTGCGTGCG
AGTGAAAGGCAGGCTTTGGTTGGTCCGCCGGAGTCTATGCGTGAACACGCTGTGGCAGCC
GCGAGGGCAATGAGGAGGGGAGACTGGCGCGCCTGCCTTAACTTTATCGTAAACGAAAAA
ATGAACGCAAAGGTCTGGGATTTGATGGTCGGCGCTGAAAACGTGCGTGCTATGCTCGGT
AGACTGATAAGGGAGGAGTCACTGAGAACATATTTGTTTACGTATGCTCATGTGTACGCA
TCGCTGTCATTGCATTCGCTGGCTGACATGTTCGAATTGCCGAGACAACGCGTTCACTCT
CTCGTATCTAAGATGATCATTAACGAGGAACTGTTGGCTTCCCTGGACGATCCGAGCGAA
TGCGCCATACTCCACCGCTCTGAACCAACCAGAATGCAAGCGCTGGCGCTGCAACTCGCA
GATAAGGTGGGTAACCTAGTAGACTCTAACGAGCGGATCTTCGAGAAGCAGGGCTCGTTC
TTCCAGCGCGGTGGCGCGCCGCGGGGGGAAGGCAGACAGCGGGACAGACCACGCGAGGGC
TGGGGCCGCAGGCAGCGCAACAGGCGTCGAGACGACGAGCGCGCTCACGAAGACTAA
Protein sequence:
MSRFFATGTDSESESSSEEEQVVRAPAPVYTFSDDEEETKRVVRSMKEKRYEELEGIIHS
IRNHRKIKDFASALASFEELQKAYTRAAPVVAKEENGVAPRFFIRALTELDDWVSGAWND
RDNRKTLSKGNSKALTSLRQKLRKYIKEFDAEISKFRENPDLPDDDDERKDTSSSDESED
EEKVKEKPRVRRSPEPQRGPPPQDDDSSDTFDWGSSSSDSSSSSDDETRAATIREKFLKK
TTERDDDEERDRRRARRERRERVGKISKKDQADDGGEWETVRKGAATSDKPKMFAKDSDI
DAALVVKKLGEISAARGRKRTDRRAQLELLHELRTVAQQHNLGDALQLKLRAATVASLFD
YNPKVSDAMKPEYWSRLVENVDQMVTLLLAHEDMMLSETITEENEQLVTPPFKVRGCLLT
ALERLDDEFIKLLKECDPHSNDYVERLKDEVRVSALIDRVCQVVERDGSPQEICRAYLRK
IDHLYYKFDPRAIKKDLSPGEETTIKKMERLCKYIYANDDSDRLRTRAILSHIYHHALHD
NWFQARDLLLMSHLQENVQHSDPSTQILYNRTMANLGLCAFRRGNVKEAHGCLAELMMTG
KPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLECVYLVSAMLIEIPYMAA
HEFDARRRMISKTFYQNLRASERQALVGPPESMREHAVAAARAMRRGDWRACLNFIVNEK
MNAKVWDLMVGAENVRAMLGRLIREESLRTYLFTYAHVYASLSLHSLADMFELPRQRVHS
LVSKMIINEELLASLDDPSECAILHRSEPTRMQALALQLADKVGNLVDSNERIFEKQGSF
FQRGGAPRGEGRQRDRPREGWGRRQRNRRRDDERAHED