| New model in OGS2.0 | DPOGS206910 |
|---|---|
| Genomic Position | scaffold1:- 1170024-1171824 |
| See gene structure | |
| CDS Length | 672 |
| Paired RNAseq reads | 41 |
| Single RNAseq reads | 99 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012866 (3e-34) |
| Best Drosophila hit | peptidoglycan recognition protein LB, isoform C (1e-43) |
| Best Human hit | N-acetylmuramoyl-L-alanine amidase precursor (7e-35) |
| Best NR hit (blastp) | peptidoglycan recognition protein-D [Samia cynthia ricini] (3e-76) |
| Best NR hit (blastx) | peptidoglycan recognition protein-D [Samia cynthia ricini] (4e-76) |
| GeneOntology terms | GO:0042834 peptidoglycan binding GO:0016045 detection of bacterium GO:0006955 immune response GO:0006952 defense response GO:0005887 integral to plasma membrane GO:0005576 extracellular region GO:0050830 defense response to Gram-positive bacterium GO:0005515 protein binding GO:0008745 N-acetylmuramoyl-L-alanine amidase activity GO:0009253 peptidoglycan catabolic process GO:0004040 amidase activity GO:0000270 peptidoglycan metabolic process |
| InterPro families | IPR015510 Peptidoglycan recognition protein IPR002502 N-acetylmuramoyl-L-alanine amidase domain IPR017331 Peptidoglycan recognition protein, PGRP-S IPR006619 Peptidoglycan recognition protein family domain, metazoa/bacteria |
| Orthology group | MCL12961 |
Nucleotide sequence:
ATGACGATTTATATCGAACTCCTAGTTTGTGCGTATATAGTGGATATAGCGAGCAGCGGC
GCTGTATTCCGTGGGCAAGATGCTGATGATGACAACGAGGTGTCAAGTTACGACTTTCCC
TACGTGACCCGTTCCATGTGGCACGCTAGACCTCCAAAAGAAAAGATACCCTTGCAATCA
CCAGTACCATATGTAGTCATACATCACTCCTATTCGCCACCGGCCTGCTATGACGGTGTA
ACCTGCCGTCAAGCTATGAGGTCCATGCAGAACTTCCACATGGACTCTAGAGGCTGGTGG
GACATAGGTTACAATTTCGCCGTCGGCAGCGATGGAGCAGCGTACGAAGGCAGAGGATGG
ACCGTGCTAGGAGCGCACGCTCTCCACTTCAATAACATTAGCATTGGAATATGTCTGATT
GGGGATTGGAGATTCTTAGTGCCGCCTTCAAATCAACTGAAGTCAGCCAAAGCTCTAATA
AATGCGGGAGTAGAACTGGGATACATCAAAAGCGACTATAAGCTTGTTGGTCATAGACAA
GTCCGGGAGACTGAATGCCCTGGTGACGCCCTGTTCCACGAGATACAAACTTGGGACCAT
TGGTCATCCTTCCCCGCCTCTTATAAGGATTTAGATAAAATTGACTTGACTGGATCTCAG
AATAAAAGTTAA
Protein sequence:
MTIYIELLVCAYIVDIASSGAVFRGQDADDDNEVSSYDFPYVTRSMWHARPPKEKIPLQS
PVPYVVIHHSYSPPACYDGVTCRQAMRSMQNFHMDSRGWWDIGYNFAVGSDGAAYEGRGW
TVLGAHALHFNNISIGICLIGDWRFLVPPSNQLKSAKALINAGVELGYIKSDYKLVGHRQ
VRETECPGDALFHEIQTWDHWSSFPASYKDLDKIDLTGSQNKS