New model in OGS2.0 | DPOGS206937  |
---|---|
Genomic Position | scaffold1:- 447975-477141 |
See gene structure | |
CDS Length | 2337 |
Paired RNAseq reads   | 396 |
Single RNAseq reads   | 976 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012879 (7e-14) |
Best Drosophila hit   | Snm1 (3e-66) |
Best Human hit | DNA cross-link repair 1A protein (2e-70) |
Best NR hit (blastp)   | predicted protein [Nematostella vectensis] (2e-85) |
Best NR hit (blastx)   | predicted protein [Nematostella vectensis] (2e-83) |
GeneOntology terms    | GO:0006289 nucleotide-excision repair GO:0016787 hydrolase activity |
InterPro families    | IPR001279 Beta-lactamase-like IPR011084 DNA repair metallo-beta-lactamase |
Orthology group | MCL18418 |
Nucleotide sequence:
ATGGGTGGTCATAAGTCTAGGACTACATCTTATCATCCACGTTCAGAAGGAATGGTGGAG
CGATTCAACAAAATATTGGAAAGATATCTGTCAAAGATAGTTTCTTTGTCGCTAAGAACA
GGTAAAATTAAATTAAATCAACCACTAGGTGAGGTTCCCCAATTGGAAGAGACAGCTACA
ACCGAACCAGCTGCCAGCACCATGGAAGGTGTATCAAGTATAACATGTAATAATAATGGC
CAATTAGGAATTACTCCTATCGCTGAACTAAATAATGATACACCAGTTTCACTCAATTTT
AACAATATAGACATAGAAGTTCCTAAAACTAACACCGACGACAATGAGAATGACAATAAT
CAAAATTCTCTGATACTAGTACTGTTACAAGAACCCATTATGTGTAGTGATACAACTCTT
CTGTATGAAGACAATAAAATTCCCATCGCTTCAACGTCATCAGTTGGTAATTTTAACAAT
ACAATTATCAATTCAAATAATAATATGAAAATTGCTGATGATTGCAAAGAGGAAAATGAA
GCAATGGATAATGTTGATTGTGTTATCGCTGAAAGCTGTCAAAAATCTGATGAGTCAACA
TTAGATGTGAACAATTTGAGTCCTAAACTCAAGCCATCAAAGAGAAAATCTGTCTCTGTC
AACTTAGAAATTAAAAAACAAAAGTTGACACATACAGATGATGGAGAAGAGAAATTAAAA
GTTCTTATTTTAAACGCAAACGCCATTGAGAAACTATCCCCTGTCATTATACAACCACAA
AATTATAAATTAGTGAAACGAAAAATTCGTGATAGAAGTATATTGAAAAACAAAGTTAAC
AAACCGGTGTGTGATACATATAATGGGAAAAGTGTTAGTGGCAATTTAAAACAGAAACCA
ATAGATTGTTATTTCACTAGTGCTTACCATCTGAGGTCTTATACAAAGAGATTAAAGGAT
AATGTTGACTCAGTTAATCACGCACTAGCCGTGGTGCGTGATGAGGCTCAGGAAATGAGC
AAAAATTTGGGTATAGCCGACCTCAAATGCGATATAGGCCGGTCGTTAAAGGAGCGCAGA
AATGACAAATTACCGAAACTATTGCCGTATTCAGCACCAGCTAAACGAGATATCAAGGCG
TCCATGTCGGAGGCGCCCAGCGGTTTGTCGCCGAGAAATAGACAGGATAGCCTAGGCTCC
CATTCGCCGAAAAAAAACGCTGACTCCATTCAGCTCGGTTTGGGATTGAAGACGAAGTTA
AATAAAGCAGGCGTCAACCGAAACATTCCACATTATAAAATTGTCGCAGGGACGCATTTT
GCCGTCGATGCATTCTCATACGGCGATATACCCAACGTGAAACATTACTTCCTGACGCAT
TTCCATTCCGACCATTATTCGGGTTTAAAGAAGAATTTCAACAAATTGATTTTCTGTTCG
CAGATTACAGCGGATTTATGCATTTCGCGTTTGGGCGTTAATTTGAAATGCTTCCACGTT
ATAAACGTCGATGAAACTATAAAAATTGAGGGTGTCGAGGTCACAGCCGTTGACGCTAAT
CACTGCCCTGGCGCTTTGATGTTGGTATTCACTTTGCCCAATGGTAAGACGCTTCTGCAT
ACTGGAGATTTTAGGGCGTGTCCTCCTATGGAGTCATATCCTGTTTTTTGGAACAAAGAT
ATACACACAATATATCTTGATACGACCTATTGCAATCCTCGCTATGACTTTCCAACGCAA
GATCAAAGCTTGGAGATGGCTCTGTACATTTTGAGGCAGAAGAAAATTACTCTAGAAAAG
GCCGGGAAGCAGTTTTCATCTGTACTCATAGTGTGTGGAACTTACACCATTGGTAAGGAG
AAGTTCTTCCTTGGTCTGGCTCGTCGCGTGGGATGTTCAGTGTGGGCGTGTCCGGAGAAG
GACCGCGTGCTGCAGGCGGTGGAGGGTCGCAGCTTCAATCACTCGCAACCAGCCAGCTGT
CAGCTGCATGTTGTGCCCATGAGGGATCTGGTGCATGAGAAATTACAGACATATCTGGAA
AGTCTGAAAGGATCGTTCAGCGAAGTTGTTGCTTTCAAACCCAGTGGCTGGGAGAATGGT
AGAAATTCATCAGTGCAAAAGGACTCTGTTACAATACATGGTATACCATACAGTGAACAT
TCTAGTTTTTCAGAAATGATTAGATTTGTCAAATTCCTAAAGCCGAAACAAGTTGTGCCC
ATAGTTGATATTTCCGGTGGGATTAAAACTGTACAGAAGTTTTTTCCTTGTCCTTTGGTT
AATAGAGATGATCTGCAGTGTCAAAGTCGGGTCACAGACTACTTCACACACGGCTGA
Protein sequence:
MGGHKSRTTSYHPRSEGMVERFNKILERYLSKIVSLSLRTGKIKLNQPLGEVPQLEETAT
TEPAASTMEGVSSITCNNNGQLGITPIAELNNDTPVSLNFNNIDIEVPKTNTDDNENDNN
QNSLILVLLQEPIMCSDTTLLYEDNKIPIASTSSVGNFNNTIINSNNNMKIADDCKEENE
AMDNVDCVIAESCQKSDESTLDVNNLSPKLKPSKRKSVSVNLEIKKQKLTHTDDGEEKLK
VLILNANAIEKLSPVIIQPQNYKLVKRKIRDRSILKNKVNKPVCDTYNGKSVSGNLKQKP
IDCYFTSAYHLRSYTKRLKDNVDSVNHALAVVRDEAQEMSKNLGIADLKCDIGRSLKERR
NDKLPKLLPYSAPAKRDIKASMSEAPSGLSPRNRQDSLGSHSPKKNADSIQLGLGLKTKL
NKAGVNRNIPHYKIVAGTHFAVDAFSYGDIPNVKHYFLTHFHSDHYSGLKKNFNKLIFCS
QITADLCISRLGVNLKCFHVINVDETIKIEGVEVTAVDANHCPGALMLVFTLPNGKTLLH
TGDFRACPPMESYPVFWNKDIHTIYLDTTYCNPRYDFPTQDQSLEMALYILRQKKITLEK
AGKQFSSVLIVCGTYTIGKEKFFLGLARRVGCSVWACPEKDRVLQAVEGRSFNHSQPASC
QLHVVPMRDLVHEKLQTYLESLKGSFSEVVAFKPSGWENGRNSSVQKDSVTIHGIPYSEH
SSFSEMIRFVKFLKPKQVVPIVDISGGIKTVQKFFPCPLVNRDDLQCQSRVTDYFTHG