| New model in OGS2.0 | DPOGS207088 |
|---|---|
| Genomic Position | scaffold1:+ 2415143-2417830 |
| See gene structure | |
| CDS Length | 2688 |
| Paired RNAseq reads | 930 |
| Single RNAseq reads | 2477 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013053 (5e-12) |
| Best Drosophila hit | CG7879, isoform B (5e-18) |
| Best Human hit | RNA-binding protein 12 (3e-07) |
| Best NR hit (blastp) | PREDICTED: similar to ENSANGP00000015961 [Nasonia vitripennis] (5e-40) |
| Best NR hit (blastx) | heterogeneous nuclear ribonucleoprotein (hnrnp) [Aedes aegypti] (1e-29) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0005634 nucleus GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL17603 |
Nucleotide sequence:
ATGATGTTAGACGGAGGAAAAATCAAAGAAATCCAAGTTAAGCTTCTTCTGAGTTCTCGG
TCGGAGATGCATAAAGTGATAGAAGCGGCTCGACAAAACGTTCCCCTTCTTAATATCAAT
GCTCCGGCCGCTAGCCCTGCTCCAACTCCAGCTGCCCCTGCAGCGCCAGTTATTACACCG
TTCTCAGCAGCTCTAGGAACTGGCATATCGACTTTTGGAATACCGGGTATCGGAAATCCG
CAAGAGATACCACAACCTGCCGTCATAGAACCACCAGCGCCAATTATAAGCCCACCTGCT
AAATCTCCTGTTGAAGAAGAAAAGGATGAGGATACGAAATCTGACAGAAAACGTAGTAAG
GAGAAAGACAGACGCCGAACACGGTCACGGTCCAGGTCGAGAGATCGAAAGGATAGAAAA
CGAGATCGAAGAGACAGATCACGATCCAGAGACAGGAGACGACGGGATCGGAGTCGGAGC
AGGGAGAGACGAGATCGGAAACGTGAAAGAAAGGACCGTAGTCGCTCCCGAGACAGGTCG
CCTTCCAGACGATCACGCGATAAGCGGAACGGAGATCGTAAATCACCACAAGGTTCAATG
GACAGATCCCAAGAAAGTAGTCTTGATAATTCACTGTCAAATTCTACACCTCCTTTTGGC
GGTTTGCTGAATTCTAACGGTCCGCAAATGGGTATGATACTCCCAAATAGTGCAATGTCT
AATCTGCAATTAGGTCAGGGTGATCTGACACAAACTCGTTTCAATGATCCATCTTTAGCT
GAGGCATTCAATAAATTACAAGAATTAGGTAAAAAACGTAATCCCAATGCATTCCAAGGA
GAGCAACAGAATGGTAGTAAATTTTCAAGTGGCAGAGGTGGAAGTAGTAGCTCTAGGAAT
CAATTCCGTCGTGAGGGTCGATCTACGAGATTTGAAGATCAGCAAAGAGACTGCTGCGTG
GCTATAAGAAATGCGCCAAACCACACAAGTTATGGTGACGTTCGTCGTTTTTTCCCTTTT
ATGATCGATAAACGAGGAATAAAAATGATTAATGATAATATGGGTCGGCGAACTGGAAAT
ATATTTGTTAGATTTTGCGACTCTCGAGCAAAACAGCTTGCCTTACAACGCAAACCAAAT
GAGTTAAAAGGAGCTCAAGTAATTGTAGAATCTTTGGACGATGATACTTACGACGCTGCT
ACAGACTCATTCCTTCCTTACCGTGAGGATAATGACGAAGAAGAATCTACATTGACAGTC
TCAGATACAGGAGACGATAATAAAACTCAATTCAGTGTTCTCAAACTGATAGATCTCCCT
CATTTTGTGCAAGAACAAGATATTATGAAAGCATTTAGCGATTTTTCACTTTTATCGATC
CAACTTGTTGACTGTCGCCATAACCGTACTAAAAATGCATATGTTGAGTTTGTAAAACCA
GATGATGCCAAAATAGCTTTAGAACGCAAAGATTCTTATGTTTTCGGAAGACGACATCCA
GCTATCACTCCACTTACAGATGAAGAGTATAAAAACGATAAAAATGAAAATTCTGATGTG
TCTGGAAAATCGCAATCCAGTAAAAATTCATTACAAGAACAGGCTGTGCCTCGAGATCCT
CGTCAGCGACGGTTATTGGATAATGGTCTGGGAGGGCCACAAATGCATAACGCACAACAG
CCTTTCTTTCCCAATACTGCATTTGCACAAAATTTTAGGTCACCCTTTCCCAATCCACAA
TTCGGTGGTTTTGGAGGTATGGATCATAGAGGTTTGATTCAGAATTGGGGCAACCGAATG
AACTTCCCCAACAAGTCGGATGTTCAATCAAGTTCCCAGGCTATATCTCTCAACATTGAT
GAGGAATCCCTCGATTGCGTCCTCATGAAAGGTCTTCCTCGCGAAGCTACGGACAGAACT
ATCGTCAACTTTTTGTCAGACACGGGAGCCGTACCTGCGAGGATCCACCTCATGCTAGAC
AACAACGGTCTTCCTTCGGGAGATTGCTTTTGCGAGTTTAGAACCTCTCAAGAAGCTAGG
CAAGCAAGCACTAAGCATGGCAGTCTTTTGGATGGTTGCCGCGTTACCGTCGATTTGGTT
TTGAGAAGTGTCGTAGAGGAAGCTTTGGAAGGACCCAAGGACACAAATCAGGGGACTCAA
GAGGGTCTACTCGGACCGCCACCTCCCTTCGTCAACGTACCTCGCATGCCATTTTTCCCG
AATCGTGGACAGTTTCGAGGTCGAGGATTCGATAGAGGAGGATTCGACCGAGGCGGATTT
ATGAATCGTGGCGGGTTTGATCCCCGAGGGCGTGGCATGATGCGCGGTCGCGGTGGCTGG
CCAGATCGTGGTCGCGGGTTCGACCCAAGAGGCCGTGGCCGAGGCTTCATGCGCGCGCCT
GCACCTAGAGACGACGAGCCAGATCCAGCACTCGAAGATTTCGGCACGCCAGGTTGCGTG
CTGTCTATGGAGAATGTACCTTTCAGAGCCACTATTGACGACATCCTCGCGTTCTTCAGT
GACTTTGAGCTGACACAGGACGACGTTATCCGCCGCTACAACGAACGCGGTCAACCCACA
GGAGATGCGCGTGTTTCGTTCCGCACTCCATTCGACGCTAAGCGTGCACAGTCGTCCCAC
AACCTTTCGTCCATCTTTGACCGCCGCATTACGCTTACTTTACTCTAG
Protein sequence:
MMLDGGKIKEIQVKLLLSSRSEMHKVIEAARQNVPLLNINAPAASPAPTPAAPAAPVITP
FSAALGTGISTFGIPGIGNPQEIPQPAVIEPPAPIISPPAKSPVEEEKDEDTKSDRKRSK
EKDRRRTRSRSRSRDRKDRKRDRRDRSRSRDRRRRDRSRSRERRDRKRERKDRSRSRDRS
PSRRSRDKRNGDRKSPQGSMDRSQESSLDNSLSNSTPPFGGLLNSNGPQMGMILPNSAMS
NLQLGQGDLTQTRFNDPSLAEAFNKLQELGKKRNPNAFQGEQQNGSKFSSGRGGSSSSRN
QFRREGRSTRFEDQQRDCCVAIRNAPNHTSYGDVRRFFPFMIDKRGIKMINDNMGRRTGN
IFVRFCDSRAKQLALQRKPNELKGAQVIVESLDDDTYDAATDSFLPYREDNDEEESTLTV
SDTGDDNKTQFSVLKLIDLPHFVQEQDIMKAFSDFSLLSIQLVDCRHNRTKNAYVEFVKP
DDAKIALERKDSYVFGRRHPAITPLTDEEYKNDKNENSDVSGKSQSSKNSLQEQAVPRDP
RQRRLLDNGLGGPQMHNAQQPFFPNTAFAQNFRSPFPNPQFGGFGGMDHRGLIQNWGNRM
NFPNKSDVQSSSQAISLNIDEESLDCVLMKGLPREATDRTIVNFLSDTGAVPARIHLMLD
NNGLPSGDCFCEFRTSQEARQASTKHGSLLDGCRVTVDLVLRSVVEEALEGPKDTNQGTQ
EGLLGPPPPFVNVPRMPFFPNRGQFRGRGFDRGGFDRGGFMNRGGFDPRGRGMMRGRGGW
PDRGRGFDPRGRGRGFMRAPAPRDDEPDPALEDFGTPGCVLSMENVPFRATIDDILAFFS
DFELTQDDVIRRYNERGQPTGDARVSFRTPFDAKRAQSSHNLSSIFDRRITLTLL